Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00014 ATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGTATAACAGTAAGGCAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTTTTCAAGAAGGCACAGGAGCTCTCAACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGTATGCAGCAGGTAATTGAAAGGTATGATCAGCATTCAGCCATTCAAAAACTAGGCCAATCATCTGTTGATCTGCAGCTTGAAGGTGATGAGAACCAGCTGAGCAAGGTAGTAGCAAAAAGGACTCGTGAATTGAGGCGATTGAATGGGGAAGAACTTCAGGAATGCGCACTTGAAGAATTGCAGGAACTAGAGGAAAGACTTCAAAGAGGCTTGTCCCGTGTTTCAAAGACAAAGGATGAAAGAATCGTCAAACAGATCAACGCACGCAGGAGAAAGGGAATCCAACTCATGGAACAAAATCAAAGAATGGAGCAGAGACTTGCACAAGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACAATCCTCCTCAAGACTCTGATAGTTCTGATACATCTCTCAAGCTGGGGTTGTCTTTATTCAAATAG 624 0.4263 MTRRKIQIKKIDSITVRQVTFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLFDYASSSMQQVIERYDQHSAIQKLGQSSVDLQLEGDENQLSKVVAKRTRELRRLNGEELQECALEELQELEERLQRGLSRVSKTKDERIVKQINARRRKGIQLMEQNQRMEQRLAQEQGQSSESIIICSSSDNPPQDSDSSDTSLKLGLSLFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00014 207 Gene3D - 15 84 IPR036879 GO:0003677|GO:0046983
Accr20g00014 207 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00014 207 Coils Coil 107 141 - -
Accr20g00014 207 Pfam K-box region 90 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00014 207 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Accr20g00014 207 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Accr20g00014 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Accr20g00014 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 MobiDBLite consensus disorder prediction 180 201 - -
Accr20g00014 207 FunFam Transcription factor, MADS-box 13 82 - -
Accr20g00014 207 MobiDBLite consensus disorder prediction 180 207 - -
Accr20g00014 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr20g00014 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00014 1 203 MADS-box Gene Family AT2G22540 47.881 6.31e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr20g00014 K-box 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00014 - - pcin:129285573 233.802