Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00013 ATGACGAGAAGGAGGATACAGATAAAGAAAATAGACAGTATAACAGCAAGGCAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAGCTCTCAACTCTTTGTGATGCTGAAATTGCGCTCTTAGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGAATGCAGCAGGTAATTGAAAGGTATGATCAACAATCAGCCAGTCAAAGACTTGGCCAATCATCTGTTGATCTGCAGCTTGAAGGTGATGAGAACAAGCTGAGCAAGGTAGTAGCAAAAAGGACCCGTGAATTTAGGCGATTGAATGGGGAAGAACTTGAGGAATGCACACTTGAAGAATTGCAGGAACTAGAGGAAAGACTTCAAAGAGGCTTGTCCCGTGTTTCAAAGACAAAGGATGAAAGAATCGTCAAAGAAATCAACGCAAGAAAGAGAAAGGGAATCCAACTCATGGAACAAAATCAAAGAATGAAGCAGAGACTTGCACAAGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAGTTCATCTGACAATCCTGCTCAAGACTGTGATAGTTCTGATACATCTCTCAAGCTGGGGTTGTCTTTATTCAAATAG 624 0.4199 MTRRRIQIKKIDSITARQVTFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLFDYASSRMQQVIERYDQQSASQRLGQSSVDLQLEGDENKLSKVVAKRTREFRRLNGEELEECTLEELQELEERLQRGLSRVSKTKDERIVKEINARKRKGIQLMEQNQRMKQRLAQEQGQSSESIIICSSSDNPAQDCDSSDTSLKLGLSLFK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00013 207 FunFam Transcription factor, MADS-box 13 82 - -
Accr20g00013 207 Coils Coil 118 141 - -
Accr20g00013 207 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Accr20g00013 207 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Accr20g00013 207 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Accr20g00013 207 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00013 207 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr20g00013 207 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Accr20g00013 207 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00013 1 204 MADS-box Gene Family AT2G22540 45.992 2.23e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr20g00013 K-box 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00013 - - pcin:129285573 237.269