Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00009 ATGACGAGAAGGAAGATAGCGATAAAGAAGATAGAGAACTTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTAAGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTGTTTTCAGCTTCTGGCAAACTGTTTGATTATGCCAGTACAAGCACGATGCGAGTGATAGAAAGGAGAAACTTGTGCTCAGATGTAAACCTTGCCAACACATACCAGTCATCTCTTGAGGTGCAGGTAGAAGGTGAACATTTCAAGCTAAACAAGGAACTAAAAGAGAAGGCTCATGAATTGAGGCAGCTCTATGGAGAAGAACTTCAAGGATTGACCCTCAGAGATCTAAGGAAACTAGAAGTTTTACTTGACACAAGCTTGAATCGCATTTCAAAAGCAAAGGCTGAAGCATTGGAGCAGGAGATCAGTATTATTAAGAAAGAGGAAGCCAGACTGATGGAAGAAAACCAGAGAATAAATCAGGTTGAAAGGCTTGAGCAAGATCAAGACCAGTCATTATTGGCCACCTCTTTCACAACGAGGTTTCTCCTTCGCTGA 579 0.4249 MTRRKIAIKKIENLAARQVAFSKRRKGLFKKAKELSTLCDAEIALFVFSASGKLFDYASTSTMRVIERRNLCSDVNLANTYQSSLEVQVEGEHFKLNKELKEKAHELRQLYGEELQGLTLRDLRKLEVLLDTSLNRISKAKAEALEQEISIIKKEEARLMEENQRINQVERLEQDQDQSLLATSFTTRFLLR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00009 192 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr20g00009 192 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Accr20g00009 192 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00009 192 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Accr20g00009 192 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Accr20g00009 192 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr20g00009 192 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr20g00009 192 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr20g00009 192 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr20g00009 192 Coils Coil 123 172 - -
Accr20g00009 192 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Accr20g00009 192 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr20g00009 192 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00009 1 168 MADS-box Gene Family AT2G22540 50.588 3.59e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr20g00009 K-box 8.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00009 - - pcin:129285682 246.128