Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr20g00005 ATGGACAAAACAAGCGAAAATACATCAAAAGAAACTCTGCATGAATATGAAGTTACAGAAGACCAAACTTTTGAAGATTTAGGATTGGATGCACGCCTAGTTCATGCCTTACTCAAAAAGGGAGTCGACAAACCAACTCCAATTCAACAGGTGGCCATTCCACTCATATTGCAAGGTAAGGATGTGGTTGCTCGAGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTTCTTCCATTGCTGCAAAAATTGTTCACTAATAACGTTCAAAGAAAGAAGCTATCACCCAATGCATTAATTCTTGTGCCAACTCGAGAACTATGTCAACAGGTATATGCAGAGGTTTCATCTCTCATTGCACTATGCAGAGTTCAATTGAAAGCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGGACAGCAATGACTGGACCACCTGATGTTTTGATTTCCACACCTGCTTGTGTTGCTAAATGCTTGTCCACTGGCATACTTAAATCAACATCCTTGAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCTGATCTTCTTTTGTCATACGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGATGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGACTTTGCCTGAACTAGGAAACCAGAAGGATGAGATTATCCCTAAAAATGTTCAACAATTTTGGATCTCATGCCCCAACGGTGATAAGCTGCTTTACATCCTTGCCTTGTTGAAGTTAGAGTTGGTACAAAAGAAAGTTCTAATATTTACCAATAACATAGACATGAGTTTCAAATTGAAACTCTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTTTTAAACGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTCGAGGAATTCAATGCTGGCCTTTTTGATTATCTTATTGCAACTGATGACAGCCACATAAAGGAGAAGGATGAAGCAACTAAAGAAAATAATGGTGAGTTGCGGCGGTCCAAAAAACTTGTCAAGCAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATCGACTTCAAAAATGTTTATACGGTTATAAATTTTGAAATGCCACAAAGTGTTGCAGGGTATGTCCATAGAATAGGACGTACTGGAAGAGCATACAATTCTGGTTCTTCTGTATCTTTGGTTTCTACTGATGAGATGGAAACTTTAGATGAAATAAGATCTTTTATTGGGGATGATGAAAACAATGGTTCAAACACAATTGCTGAATTTCCATTGCTTACAAAGAATGCTGTGGAATCTTTACGCTATAGGGCTGAGGATGTTGCAAAGAGTGTTACAAGAATCGCTGTTCGTGAATCACGAGCCCAGGATTTGAGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCACACTTTGAATCTAATCCAAGGGACTTAGATCTATTGAAGCATGACAAAGTTTTGAGCAAAAATGCCCCTCCTGCTCACCTACGTGATGTGCCAGAGTATTTAGTAGACAAAACAACCAAAGAGGCAAGGGAAATGGTCAAGCTTGTGAGGGACGCAATGGGAAATAATAGTCGATCACGAGGATCCAAAAGGAAAAAGCTCAGAAAAGGTGGAGACCCTCTGAAGGCTATATCTGCCAAGGGGCAGAAAAGACCACACAAAGGGGATGGACATAAACGCAGGAAGAAAAATGAAGTTTGA 1770 0.396 MDKTSENTSKETLHEYEVTEDQTFEDLGLDARLVHALLKKGVDKPTPIQQVAIPLILQGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLSPNALILVPTRELCQQVYAEVSSLIALCRVQLKAVQLTSNMKASDLRTAMTGPPDVLISTPACVAKCLSTGILKSTSLNGSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSDDVDKLKKLILHNPFILTLPELGNQKDEIIPKNVQQFWISCPNGDKLLYILALLKLELVQKKVLIFTNNIDMSFKLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHIKEKDEATKENNGELRRSKKLVKQKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGSSVSLVSTDEMETLDEIRSFIGDDENNGSNTIAEFPLLTKNAVESLRYRAEDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPEYLVDKTTKEAREMVKLVRDAMGNNSRSRGSKRKKLRKGGDPLKAISAKGQKRPHKGDGHKRRKKNEV 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr20g00005 589 Pfam Helicase conserved C-terminal domain 262 405 IPR001650 -
Accr20g00005 589 Coils Coil 475 495 - -
Accr20g00005 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Accr20g00005 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 451 IPR001650 -
Accr20g00005 589 MobiDBLite consensus disorder prediction 539 589 - -
Accr20g00005 589 Gene3D - 1 236 IPR027417 -
Accr20g00005 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 430 IPR027417 -
Accr20g00005 589 CDD DEADc_DDX56 29 236 - -
Accr20g00005 589 PANTHER RNA HELICASE 9 527 - -
Accr20g00005 589 SMART helicmild6 291 405 IPR001650 -
Accr20g00005 589 SMART ultradead3 41 254 IPR014001 -
Accr20g00005 589 CDD SF2_C_DEAD 251 414 - -
Accr20g00005 589 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
Accr20g00005 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Accr20g00005 589 Gene3D - 239 443 IPR027417 -
Accr20g00005 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 235 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr20g00005 23 445 Eukaryotic Initiation Factors Gene Family AT3G19760 26.526 2.73e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr20g00005 K14810 - gmx:100800749 905.975