Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03610 ATGCCTCTTCCGGCTAAATCAATAAAGGCTGCTCAGGAAGGCGGTGGCTCCGTCAAGGATTTCGAAGATCCTGAAACCCCTTCCAACAATCTATGGATTGGCAATTTATCGCACGACGTCACCGAGTCCGATCTTATGGCTCTCTTCGCCCAATACGGCGCACTTGATAGCGTCACGTCTTATTCCTCTAGGAGCTACGGATTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGAACGCGTTACAAGGCACTCTTCTGCGCGGGATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCCAACTGTTACAAAGGAAGGACTGGAGGCTGAGTTTCGCAAGTTTGGTAAGATTGAGGATTTTAAGTTTGTCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTAGATGATGCCACTCATGCCATGAAAATGATGAATGGAAAGCAAATTGATGGCGACCAAATTCGTGTAGATTTCCTTAGATCGCAGTTGTCGAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATCACAGGCCCTCCTGATTTCTACTCTGGTCAGAAAAGACCACTGCAAGCACAGCCTTCAGTTGGGAGGAAGGGAGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCTCGACGTGCCAAAGAGGGTCTTCAAGGTCGGCTTTTCAATGACCCTCGGATTACTATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGAACAAAACCTGACATGTTCTTACCTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGGCCATAATCGTCCAATGGCTCCAAATAATTTTCCCAGCCAGTTAGCACCTGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTTGCTTTCGGGTAGTGAGTTTAATGAACTGGGCACAAGCCAAAAGTTTCAGGATGGTGTCTCCAAAAGTCAAATGGGTCCAAATTGGAAACGACCATCTCCTCCAGCACCAGGGATGCTCCATTCTACACCAGGTATTAGAGCTCCAACTAGATCCACATCTAGCGCATGGGATGTGCTTGACATAAACCAGTTTCAGAGGGATCCTAAGCGTTCAAGGACAGATGGTGCTTTACCTGTTGATGATGCCGCCTTTCCTTTAAGGAATGTTGATGATCGTGCAGTAGGGCTAGAGCAATCTTATGGGATGGACCCAGTCATTGATGTTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGGCTCACCCTGGTCCAGTGGGCGCAAGGATCTCAACTGGAGTGCCTGCTTCTGTTCAAGTTGATATTGATCACATATGGCGAGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTCCCTATAGGAAAAGGGATAGGGACTGAGCTGCCAGAAGTTGTTGATTGCTCCGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTATTGGTTTTGATGTTGTCTTCTTTCTACCAGATAGTGAAGATGACTTTGCATCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGGACCACTCTATTCTTGGTGCCTCCATCTGATTTCTTAACGAAGGTTTTAAAAGTCGCAGGGCCTGAACGTCTGTATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGAACATCGTTGCAACAGCCACTGCCCTTGTCTATACCTTCAACTCAGTATATTGATAGGCAGCAGGTTACTCCTTCTCAAGTGGAGTATAGTCAGATACCTGCAAAGGAGGAAGAAATTTTGCCTATGGATTATAATAGATTGTTGCATGATGAATCTAAAGTTTCTTCAAAACGACTTTATCCAGCCGCAAGTGGCACTTCTTTAGTTCAGTCTGTACCACCAGATTATTCTTCTAGCAATACTGCTGCAGCGACCCAACCTGGAGTTACATTAACACCTGAGCTTATCGCCACTCTAGCCTCATTGCTTCCTGGAACTACACAATCATCAGCCACTGATGGTGCCAAGTCAGCAGGAGGCTCCTCAACTATGAAAGCTCCATTTCCTCCAGTTGTCCCCACTGACGCAAACCAATCTCATGTATGGAAACAGGACCATCAAATTGCAGATCCATCTAGTCATGTCCTTCAACAAGCAGCGAGTACTTACTATCAACCTTATCCACTATCATCTACTTATGGCCACCCTGGTCAAGTGGTGCCTGGCAGTTCAAATATCCAAGATTCTGCTGCCGGCTTACAGCAACAGGTTGCCATCTCGTCTAGACCCATGACTAACTTCTCAATGCCTTCTCAAAGCGGACAAGTAACTGTATCCCTCCCAATGAATCAACCATATCAGGTTGAAGTCTCCTCAAGCTCTCAGAAAGGCTATGGAGTGGCGCAGGGAATGGATGCCTCTGTTTTATATAGTTCTCAGGCTTTTCAGAACCCTAATATTTATGTTTCCTCAGCTAATCAAGTTCATAGTGCTAACCCTTCTCAACAACAAACTGCTATGCCATATTCAGCAGACAAAGTGAACGCAGAGCTTCCAAATCAACAGTTTCAATCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCTGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCCGCCAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAGCAACAAACCCAAGGAGGGCGTGGGGCTGGAAATCAACAATGA 2994 0.4549 MPLPAKSIKAAQEGGGSVKDFEDPETPSNNLWIGNLSHDVTESDLMALFAQYGALDSVTSYSSRSYGFVFFKRVEDAKAAKNALQGTLLRGIPMKIEFARPAKPCKQLWVGGISPTVTKEGLEAEFRKFGKIEDFKFVRDRNTAFVEYFNLDDATHAMKMMNGKQIDGDQIRVDFLRSQLSKKDMLLEYGQFQGKITGPPDFYSGQKRPLQAQPSVGRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFPGSKGTKPDMFLPEQTFRPLQMDVFGHNRPMAPNNFPSQLAPGVIVGPNVPLRPFGPQGSLEPLLSGSEFNELGTSQKFQDGVSKSQMGPNWKRPSPPAPGMLHSTPGIRAPTRSTSSAWDVLDINQFQRDPKRSRTDGALPVDDAAFPLRNVDDRAVGLEQSYGMDPVIDVGSGPFVNIQGKAHPGPVGARISTGVPASVQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAIGFDVVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSIPSTQYIDRQQVTPSQVEYSQIPAKEEEILPMDYNRLLHDESKVSSKRLYPAASGTSLVQSVPPDYSSSNTAAATQPGVTLTPELIATLASLLPGTTQSSATDGAKSAGGSSTMKAPFPPVVPTDANQSHVWKQDHQIADPSSHVLQQAASTYYQPYPLSSTYGHPGQVVPGSSNIQDSAAGLQQQVAISSRPMTNFSMPSQSGQVTVSLPMNQPYQVEVSSSSQKGYGVAQGMDASVLYSSQAFQNPNIYVSSANQVHSANPSQQQTAMPYSADKVNAELPNQQFQSALQGASQGTSSEVEADKNQRYQSTLQFAASLLLQIQQQQQQQTQGGRGAGNQQ 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03610 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 21 99 - -
Accr1g03610 997 SMART rrm1_1 30 97 IPR000504 GO:0003723
Accr1g03610 997 SMART rrm1_1 227 295 IPR000504 GO:0003723
Accr1g03610 997 SMART rrm1_1 107 174 IPR000504 GO:0003723
Accr1g03610 997 CDD SPOC_FPA-like 519 639 - -
Accr1g03610 997 CDD RRM_SF 108 174 - -
Accr1g03610 997 SUPERFAMILY RNA-binding domain, RBD 21 103 IPR035979 GO:0003676
Accr1g03610 997 Gene3D - 216 303 IPR012677 -
Accr1g03610 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Accr1g03610 997 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Accr1g03610 997 CDD RRM_SF 31 97 - -
Accr1g03610 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Accr1g03610 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Accr1g03610 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Accr1g03610 997 Pfam SPOC domain 516 631 IPR012921 -
Accr1g03610 997 Gene3D - 5 103 IPR012677 -
Accr1g03610 997 Gene3D - 104 215 IPR012677 -
Accr1g03610 997 SUPERFAMILY RNA-binding domain, RBD 103 184 IPR035979 GO:0003676
Accr1g03610 997 MobiDBLite consensus disorder prediction 200 222 - -
Accr1g03610 997 FunFam flowering time control protein FPA 219 312 - -
Accr1g03610 997 MobiDBLite consensus disorder prediction 1 25 - -
Accr1g03610 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Accr1g03610 997 MobiDBLite consensus disorder prediction 752 773 - -
Accr1g03610 997 FunFam Flowering time control protein FPA 21 103 - -
Accr1g03610 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03610 Accr-Chr1 72610194 72618190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03610 19 217 Eukaryotic Initiation Factors Gene Family AT4G34110 24.783 8.71e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03610 - - gmx:100777570 1391.71