Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03587 ATGTCGTCAACCACCGCAGCCTGCCCCATGCCCGGCCTTGAGTCGCCTGACCTTCACACTCCGACATTAGACAGGGAGTCTGCGGGGCTTATTCAGTCCATTTCCGAGCATGGAGGCTATGCTTATGTCAGGATGGCGTTCCTGGCGGCCGCCGGTGACTTTCGCGCTGCTGAGGCGGCTCGTGAGATGGCATGGGAGCAGCTTCACTCGGGGCCCTGGCACTCTGTCCTTCCGGTGTGGCGTGATGCTTATTCCATGGCTTGCCTCCTCGTGGCCAAGTGCCATTATAGAATTGGTGAGTTCAAGGAGGCCCTTAGGTCGTTGGACTTGGGCCTCATCATGGGAGGGATGCTTTTAAGGAAGGACTTGGACTCTGCTGTTGAGAAAGTTTCGGGGAAGGTCAGAAACATTGGGGTTTCTGAAGATTGTTGTGGAGGTTTGGAGAAGCATGAGCATCCACTTGTTAGGCAGCAACTTAATAACGCTGAGGTGCTCCAACTTTTACCTTTCAAGTCCTTCTCCAGTAAAACTGTAATGAAGAAGTCGGCTCTGTCATTGGAAAAATTTCTGAAAGACTATTACCTGTCTCGTTCCCCAATTATTATCAGCGATTGTATGGATCACTGGCCAGCCAAGGCAAAATGGAATAACAAAGATTATTTGAAAAGAGTTGCAGGTGACCGCACAATTCCAGTTGAGGTTGGGAAGAACTACTTATGTGCTGAGTGGAAGCAAGAGCTAATCACATTCTCTGAGTTTCTTCAGCGGATTGAGTCTCCTGGCTGCTTATCCTGGGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAACTGAGCTTCGAAAAGATATTTGTATACCAGACTATTGTTTTACAGGAGGAGGTGAGCTTAGATCCGTCAATGCTTGGTTTGGTCCAGCTGGGACAGTAACGCCGTTACACCATGATCCACACCATAATATATTAGCACAGGTTGTTGGAAAGAAATATATCAGGCTTTACTCTGCATCTTTTTCTGAGGAACTTTACCCCTACACGGAAACCTTGCTTTCGAATTCCAGCCAGGTCGATTTAGATGATATAGATGAAATGAAGTTTCCGAAGGTGCAAGACCTGGAATTTGTGGACTGTATTCTAGAAGAAGGCGAAATGCTATATATCCCGCCCAGGTGGTGGCACTATGTCCGATCTCTGACTACAAGTTTATCAGTTAGCTTTTGGTGGAGCGAGGGTGGAAGTTCGTGCGCATCCTGA 1260 0.4778 MSSTTAACPMPGLESPDLHTPTLDRESAGLIQSISEHGGYAYVRMAFLAAAGDFRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLLVAKCHYRIGEFKEALRSLDLGLIMGGMLLRKDLDSAVEKVSGKVRNIGVSEDCCGGLEKHEHPLVRQQLNNAEVLQLLPFKSFSSKTVMKKSALSLEKFLKDYYLSRSPIIISDCMDHWPAKAKWNNKDYLKRVAGDRTIPVEVGKNYLCAEWKQELITFSEFLQRIESPGCLSWGPTYLAQHPLFDQITELRKDICIPDYCFTGGGELRSVNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASFSEELYPYTETLLSNSSQVDLDDIDEMKFPKVQDLEFVDCILEEGEMLYIPPRWWHYVRSLTTSLSVSFWWSEGGSSCAS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03587 419 SUPERFAMILY Clavaminate synthase-like 183 411 - -
Accr1g03587 419 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 82 412 - -
Accr1g03587 419 Gene3D Cupin 177 411 - -
Accr1g03587 419 Pfam Cupin-like domain 188 412 IPR041667 -
Accr1g03587 419 ProSiteProfiles JmjC domain profile. 262 419 IPR003347 -
Accr1g03587 419 FunFam lysine-specific demethylase JMJ30 177 410 - -
Accr1g03587 419 SMART cupin_9 268 419 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03587 Accr-Chr1 72266141 72269592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03587 172 410 Acyl Lipid Metabolism Gene Families AT3G45880 24.390 1.17e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Accr1g03587 Cupin_8 1.4e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03587 K24444 - qsa:O6P43_000107 647.121