Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03583 ATGGAGCAGATGAATTCGGGCCTCACACGTTACCGATCGGCGCCCACTTCCTATTTCACCAATATAATCGACAAGGAGTGCTATGAGCACATATTCAATCGACCGTCTAGCCCCGAAACCGAGCGAGTTTTTTCGCGCCTAATCAGTAGTTTTGCTGAGGACCCCCCACCTCAAAGTCTCGCACCCCTTACTGTGAAGCAAGAGGACGACCAGAACCATCAGGCTGAGCCTATGCCATCCGTCAACAATGAACCGGCGCTTACGCGGCGGCAGCAGAACAACATGAGTATTTACGACAGTGCTCCTCGTAATGTATCCACGAGCTCAGCGAGACCCCCTCTGCCAAATCAGAGCCATCCCTCGGCTAATCGGTTGCCTCCTATGAAGACTGGACTTGGAAATACTACTTGCAATCTTACCAGGCATAATAGCTCCCCTCCTGGACTCTTTGCCAACTTCAACATTGATCCTGGCTATGCTGCGGCTCTGAGAGGCATGGAAACTTTTGCAGCTGCAGATAACGCTGCCGAAGTCGCAGGCTTTCCTTCCGCAGGGACGTTGAGGAACCGACCGGCTTACTCGCCGGGGTTAATGTTACCCATAGCTCAGACCGGAGTTAAAAAGAACATAGAATTAGATAATCCCCAGAAGGAGGCCTTTAGTGAAAGCCAGGACAATGATTTTATCTCAGGTTTCCCTTTAGATCCTTGGGACGACTCTGCAATTATGTCTGACAATATTAGTGGTCAAAAAAGATACAGAGACGAAGAGAATGATGCAAAACCATTTTCTGGTTTAAGTGCGGCTGAAACCGAGAATGAGAGGGGAGGCCAGGCCAGTGGCCCTCCTCCATTGACTCATCACTTGAGTTTGCCAAAAACTGCAATGGAGATGGCAGCCATTGAGAAGTTATTGCAGTACTCAGATTCTGTTCCCTGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCATCCCCGAAGCATTGCAGAGCGGGTTAGAAGAACTAAAATTAGTGAGCGCATGAGGAAACTACAAGATCTGGTTCCCAACATGGACAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTGTCGACTACATTAAAGACCTCCAAAAGCAGGTTCAGACACTTTCGGACAGTCGATCTAGATGTACGTGTTTGCCTGGGCAGCGTCAATAA 1182 0.4924 MEQMNSGLTRYRSAPTSYFTNIIDKECYEHIFNRPSSPETERVFSRLISSFAEDPPPQSLAPLTVKQEDDQNHQAEPMPSVNNEPALTRRQQNNMSIYDSAPRNVSTSSARPPLPNQSHPSANRLPPMKTGLGNTTCNLTRHNSSPPGLFANFNIDPGYAAALRGMETFAAADNAAEVAGFPSAGTLRNRPAYSPGLMLPIAQTGVKKNIELDNPQKEAFSESQDNDFISGFPLDPWDDSAIMSDNISGQKRYRDEENDAKPFSGLSAAETENERGGQASGPPPLTHHLSLPKTAMEMAAIEKLLQYSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDSRSRCTCLPGQRQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03583 393 MobiDBLite consensus disorder prediction 268 289 - -
Accr1g03583 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 386 IPR036638 GO:0046983
Accr1g03583 393 Gene3D - 322 387 IPR036638 GO:0046983
Accr1g03583 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 321 371 IPR011598 GO:0046983
Accr1g03583 393 MobiDBLite consensus disorder prediction 99 130 - -
Accr1g03583 393 Pfam Helix-loop-helix DNA-binding domain 326 372 IPR011598 GO:0046983
Accr1g03583 393 FunFam Transcription factor bHLH130 family 322 391 - -
Accr1g03583 393 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 101 385 - -
Accr1g03583 393 SMART finulus 327 377 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03583 Accr-Chr1 72256376 72258285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03583 5 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.558 4.55e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g03583 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03583 - - pcin:129315911 560.451