Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03576 ATGTTTGCAAGGTGTTCGAGTCCCAAGAGAAGGTCTTGTACTTTCCCAGGAGAGGGCTTTTATCAATGCCACGCTCTTTCTCCAGCTATTCCCGATTCGCCTGTACCCTTTAACTCGTTGATTTTTCATTTACTATTTAATGAATCCCCTTTCATCTCATCTCTCCCACCGCTCCCTCTCCCTTCTCTCTTGCTAGCTAACCTTTTTATCATCATGATGAGCGACCCCCACCTCTCCAATGCCTTCAACTTTCCCTCTGCTAACTCGTCTTCTCTCACTTTACCCTCTCCTCCTCCAAGAGAAGCCCTACCTCTCCTTAACCTAAGCCCTCCAACTGAGTACAAGGAAGCACAAGGAGACATGGGATGTAGTTCTTTGAACTTGCAATTACACCTAGGCCTTCCTACCTCCTCAGACAAAGATGAAGTCCCGACGACTGTACCTTGTGGCTATCTCTCTCATAGGATCACTCCGGCTGCTCAGTACTGGATCCCTTCCCCTTCCCAGATTCTGATTGGCCCCACACACTTCTCCTGCCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATATAGAAGAGGAGCAGAGTCTCTAAGGGGAACACAGCCAACGGCAATGCTGAGGCTTCCGTGCTATTGCTGTGCACAAGGGTGCAAGAACAACATCGAGCATCCGAGGGCCAAGCCTCTCAAGGATTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCACGGCATCAAGCCCTTCATGTGCAGAAAATGTTGCAAAGCCTTTGCTGTGAGAGGTGATTGGAGAACTCACGAGAAGAACTGCGGCAAGCTCTGGTATTGCTCCTGTGGCTCTGACTTCAAGCATAAAAGATCTCTTAAAGACCATATCAAGGCTTTCGGACATGCCCACACGCCTTGTGGTGTTGATAATTGTCTCCATCATCAGGAAGTGGCCTCTGAAATTGACCACCCAAATGATTCCTTCCATTCTCATCATAGTAGCTAA 1032 0.4787 MFARCSSPKRRSCTFPGEGFYQCHALSPAIPDSPVPFNSLIFHLLFNESPFISSLPPLPLPSLLLANLFIIMMSDPHLSNAFNFPSANSSSLTLPSPPPREALPLLNLSPPTEYKEAQGDMGCSSLNLQLHLGLPTSSDKDEVPTTVPCGYLSHRITPAAQYWIPSPSQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGAESLRGTQPTAMLRLPCYCCAQGCKNNIEHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTPCGVDNCLHHQEVASEIDHPNDSFHSHHSS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03576 343 SUPERFAMILY beta-beta-alpha zinc fingers 243 281 IPR036236 -
Accr1g03576 343 PANTHER ZINC FINGER PROTEIN WIP2 84 330 IPR043584 GO:0003700|GO:0010468
Accr1g03576 343 SUPERFAMILY beta-beta-alpha zinc fingers 168 200 IPR036236 -
Accr1g03576 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Accr1g03576 343 SMART c2h2final6 261 281 IPR013087 -
Accr1g03576 343 SMART c2h2final6 177 199 IPR013087 -
Accr1g03576 343 SMART c2h2final6 224 256 IPR013087 -
Accr1g03576 343 SMART c2h2final6 287 310 IPR013087 -
Accr1g03576 343 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
Accr1g03576 343 FunFam Zinc finger protein WIP2 230 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03576 Accr-Chr1 72197162 72199001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03576 131 342 C2H2 Transcription Factor Family AT3G57670 71.698 6.58e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g03576 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03576 - - qsa:O6P43_000130 382.489