Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03572 ATGACGACGACCGCTTCCCAGGGTTATCACCAACCTTCCTCGATTGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAATACTGGGTCGACGAAAATTACCTTACTCACTGCTTCGCGCACACCGGAGAGGTAGTTTCCATAAAGATCATACGTAACAAGATAACTGGACAACCTGAGGGCTATGGATTTGTGGAGTTTGTTTCTCATGCGGCAGCAGAACGGATTCTGCAAACTTACAATGGGACCCAAATGCCTGGGACAGAACAGACTTTCAGATTGAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGACCTAGCGCCTGATGTTACAGATTACCTTCTGCAGGAGACATTCCGAGCCCATTATCCTTCAGTTAGAGGTGCTAAAGTCGTGACTGATCCTAATACAGGGCGTTCCAAGGGATATGGATTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCAAGTAGGCCAATGCGTATAAGTGCTGCAACCCCGAAGAAGACCACAGGTTTCCAACAGCAATATGCTGCAGCTAAAGCCATATATCCGATCCAGGCATATACTACCCCAGTTAATGCAGTTCCACCAGATTATGATATGAACAATACAACTATTTTTGTTGGTAATTTGGATCTTAATGTCACAGAAGAAGAACTGAAGCAAACCTTCTTACAATTTGGAGAAATTGTATCCGTCAAGATTCAGGCTGGCAAAGGGTGTGGATTTGTTCAATTTGGGACAAGGACATCTGCTGAAGAAGCCATTCAGAGGATGCAGGGAAAGATGATAGGTCAGCAAGTGGTCCGAATTTCTTGGGGTAGGAGCTTGACAGCTAGACAGGATGGCTGGGGAGCACAGATGGACCCGAGCCAATGGAATGCCTACTATGGATATGGACAAGGCTATGAAGCCTATGCTTATGGAGCAGCTCAAGATCCATCCTTGTACGCATATGGTGCATATGCTGGTTATACGCAGTACCCCCAACAGGTTGAAGGTGCTCAGGACATGGCATCTATGACTATTCCTAATATTGAACCAAGGGAGGAGTTATATGATCCCCTGAACGTGCCTGATGTTGACAAGCTGAACGCTGCATATTTATCAGTACATGGAAGTGCCATCTTAGGGCGGTCACTCTGGCAGAAAACCTCGCCCTTCACACAGGCAGCTTAG 1254 0.4617 MTTTASQGYHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAAAKAIYPIQAYTTPVNAVPPDYDMNNTTIFVGNLDLNVTEEELKQTFLQFGEIVSVKIQAGKGCGFVQFGTRTSAEEAIQRMQGKMIGQQVVRISWGRSLTARQDGWGAQMDPSQWNAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYTQYPQQVEGAQDMASMTIPNIEPREELYDPLNVPDVDKLNAAYLSVHGSAILGRSLWQKTSPFTQAA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03572 417 SUPERFAMILY RNA-binding domain, RBD 211 327 IPR035979 GO:0003676
Accr1g03572 417 CDD RRM2_SECp43_like 111 190 - -
Accr1g03572 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Accr1g03572 417 SUPERFAMILY RNA-binding domain, RBD 104 200 IPR035979 GO:0003676
Accr1g03572 417 SMART rrm1_1 230 297 IPR000504 GO:0003723
Accr1g03572 417 SMART rrm1_1 20 95 IPR000504 GO:0003723
Accr1g03572 417 SMART rrm1_1 113 187 IPR000504 GO:0003723
Accr1g03572 417 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Accr1g03572 417 Gene3D - 215 306 IPR012677 -
Accr1g03572 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Accr1g03572 417 Gene3D - 18 98 IPR012677 -
Accr1g03572 417 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Accr1g03572 417 FunFam polyadenylate-binding protein RBP45 212 308 - -
Accr1g03572 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 183 IPR000504 GO:0003723
Accr1g03572 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Accr1g03572 417 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Accr1g03572 417 CDD RRM1_SECp43_like 20 100 - -
Accr1g03572 417 SUPERFAMILY RNA-binding domain, RBD 10 87 IPR035979 GO:0003676
Accr1g03572 417 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Accr1g03572 417 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 305 - -
Accr1g03572 417 Gene3D - 102 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03572 Accr-Chr1 72160595 72164389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03572 18 312 Eukaryotic Initiation Factors Gene Family AT2G23350 27.723 5.79e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03572 - - zju:107412589 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03572 1 72160595 72164389 Accr1g03572 1 72160595 72164389 ECH