Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03494 ATGTTCGATCTTAATCTGAATGCCGATTCGACTGATACTGCTTATAAACATGAATCCCTCAAGTTCTCCGACGAGCTAACGGAAGCCTCCGGGAATCAAATGGCGAAATCGGGGACTTCCAATTCCTCTAATGTCTATGCTGACGGGTCCAGCAATGGAGGAGATGAGGACTCCTGCTCTACACGCGGTGGGGACGTCTTCACCTTTAATTTCGATATCCTTAAGGAGGAAGGCGTGAAAGAAGTCCCAGACAAGGAATTATTTCTGTCTAGTGAAACTAAAGGAGTGGACGGCGAGTCCACGAATTGGCAGGGTCAGTTTTTGTCTGCCCTTCCATCGAGAAGGAGCTGGATGAGTCTTTCCTTTGATCATCAGGGTGGTAACGGAGAGATGAAGATGGTCCAGGTTCAGCAAAAACCTCCTCAACCGCAAGTGAAGAAAAGCAGACGGGGTCCAAGGTCTCGAAGCTCGCAATACAGAGGCGTCACCTTTTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGGTTTGATACCGCTGATGCCGCTGCCAGAGCCTACGATCGTGCTGCTATTAAGTTTAGGGGAGTTGATGCTGACATCAATTTCAATCTCAATGATTACGAGGAGGATCTTATGCAGATGAAAAATCTCTCCAAAGAGGAATTCGTGCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTAACACTGCACAAGTGTGGTCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAACGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCGGCTATCAAATGCAACGGAAGGGAGGCAGTGACCAACTTTGAATTAAGAACATACGAAGGAGAGATGAAGCCTGAGGTCATTACTGAAGGTGGCGGTCGCAATCTTGACCTCAACTTGGGCATAGCAACACCAGGCAGTGGGCCGGTAGAAAATAGGGGCTATCAGTTACAACCTATCCCTTACAACATGCATACCGGAAGAATTTCAAGGAAGGAGATCAATATTGATTCAGTAAATGGTGATCAATCGTTGAAAAGGCCAGTTGTTACTGAGGAACGTCCTTCTGTATGGAATGGCATCTATCCTAGTTTCTTTCCCAATGAGGAAAGGGCTGAGAGAATAGGGAGAGATCATTCACAAGGACTGCCTCGATGGGGTTGGCAAACGCAAGGCCAGGTTGCTGCTACGCCAGTACCCCCGTTCTCTGCTGCAGCATCATCAGGATTCTCAATTTCAGCTAACTTTCCTTTGGCTACCATCTTTCCATCAAAATCTTTGAGTTTGAACTCAATTCCCCATGATATCTGTTTTGATCCGTCTGGCAGCGACACAAATCAACATTGCCAGACCAAGCCCCCGCACGGCCCCCTCTGA 1473 0.4745 MFDLNLNADSTDTAYKHESLKFSDELTEASGNQMAKSGTSNSSNVYADGSSNGGDEDSCSTRGGDVFTFNFDILKEEGVKEVPDKELFLSSETKGVDGESTNWQGQFLSALPSRRSWMSLSFDHQGGNGEMKMVQVQQKPPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADAAARAYDRAAIKFRGVDADINFNLNDYEEDLMQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDNEVEAARAYDKAAIKCNGREAVTNFELRTYEGEMKPEVITEGGGRNLDLNLGIATPGSGPVENRGYQLQPIPYNMHTGRISRKEINIDSVNGDQSLKRPVVTEERPSVWNGIYPSFFPNEERAERIGRDHSQGLPRWGWQTQGQVAATPVPPFSAAASSGFSISANFPLATIFPSKSLSLNSIPHDICFDPSGSDTNQHCQTKPPHGPL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03494 490 CDD AP2 158 213 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 MobiDBLite consensus disorder prediction 31 58 - -
Accr1g03494 490 MobiDBLite consensus disorder prediction 136 159 - -
Accr1g03494 490 CDD AP2 249 307 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 121 339 - -
Accr1g03494 490 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Accr1g03494 490 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Accr1g03494 490 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Accr1g03494 490 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Accr1g03494 490 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Accr1g03494 490 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Accr1g03494 490 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Accr1g03494 490 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03494 Accr-Chr1 71414940 71418594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03494 105 333 AP2-EREBP Transcription Factor Family AT4G36920 71.008 2.55e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Accr1g03494 AP2 9.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03494 K09284 - gmx:100777102 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03494 1 71414940 71418594 Accr13g00233 13 2311682 2315128 CCT
Accr1g03494 1 71414940 71418594 Accr1g03494 1 71414940 71418594 ECH