Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03488 ATGGATCCTTCCCGTGTACAACATCAGCAAATGTCAAACCAATCACTGGAGAACATGATAGCGTGCTCAAAAGCACAGCAAGAGAGGAAGCCGAGGCCTCAACCAGAAGAAGCGCTGAAATGCCCAAGATGTGACTCCACGAACACCAAATTCTGTTACTACAACAACTACAGTCTTTCTCAGCCAAGATACTTCTGCAAGTCATGCAGGAGATACTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGTGGAGGCTGCAGGAAGAACAAGAGATCTTCTTCATCAAAGAGGGCTCAAGATCAACCACTCACACCCCACAACAACCCACTCGCTGCCATCCCTTCATTATCTTATGATTCCAATGACCTTACCCTCGCATTAGTTAGGCTCCAAAAGCAATCCACCGGGCAATTGGGTTTTGATGACCATGATCTTTCAATTATGGGGAATCCCACCAGCTCCCATTTTGATATTCTTGGCAACACCACAAGTCCTGGATTTTTAGATGCATTTCGAAGTGGGTTCGTGGAAAACCAGCAGCAGAGTCATAATTTGCAAAATCTGTACTGTGGATATGGAAATGGCGACATGGGAGAGGTGGACAATGGCAACGCAGAGATGATGCTACCTTATGATCAAGAAATCAATAATAATGCACCCACAACGCAAGCCGTGACGGTCGCTACTATGAAGCAAGAAATCATGTGTAATGGCAGGGAACAAAGTGAGAACAAGGTGTTGTGGGGTCTTCCATGGCAGTTCAATGGAGACAATATAAACATGGGAGGGCTTGATTCAGGAAGAGCAAGTTGGAACAATGGTCTCAGTTCATCTTGGCACGGCCTTCTCAATAGTCCCCTAATGTAG 873 0.4605 MDPSRVQHQQMSNQSLENMIACSKAQQERKPRPQPEEALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSKRAQDQPLTPHNNPLAAIPSLSYDSNDLTLALVRLQKQSTGQLGFDDHDLSIMGNPTSSHFDILGNTTSPGFLDAFRSGFVENQQQSHNLQNLYCGYGNGDMGEVDNGNAEMMLPYDQEINNNAPTTQAVTVATMKQEIMCNGREQSENKVLWGLPWQFNGDNINMGGLDSGRASWNNGLSSSWHGLLNSPLM 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03488 290 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Accr1g03488 290 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Accr1g03488 290 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 200 IPR045174 GO:0003700|GO:0006355
Accr1g03488 290 MobiDBLite consensus disorder prediction 1 22 - -
Accr1g03488 290 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Accr1g03488 290 MobiDBLite consensus disorder prediction 1 39 - -
Accr1g03488 290 MobiDBLite consensus disorder prediction 83 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03488 Accr-Chr1 71353247 71354730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03488 1 290 C2C2-Dof Transcription Factor Family AT2G28510 39.039 3.31e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr1g03488 zf-Dof 4.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03488 - - dzi:111285777 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03488 1 71353247 71354730 Accr13g00250 13 2407369 2408250 CCT
Accr1g03488 1 71353247 71354730 Accr1g03488 1 71353247 71354730 ECH