Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr1g03483 | ATGGCGAATTCAACCCACGACGAAGACGAGCTCCAAAACCTACTTGATGAGCAAACCCAAGAATTGATGATGGCTAAAACACTAGCCTCCGATATCGATTTGGCCTTCGAACTGCAAATGCAAGAAGCGGTTAATTCGTCTCTCGGTTCTCAAACCCCTGTTTCACCCCCTTATGCTGTCATTTCCTCCGATGAAGAAAAAGATGGCGGCTTTCTGGGCTTGGCGGCCACGCTTATGCTGGAAGAAGTTCACAGGCTCCCGCAAGAGTTTAAGGACCTCGAACTATGCCAAGCAGAGATGACGAAGATGAGAGAAGATCTGGACCGTCGGGTTTTCGATCAGACTTTCGCGAGAGACATTCTGAATATTCCCGAGTACCAGTGGGAAAAGTATGGCGACAATTACCACAGGCCCTACTATGTTGACGGACAATCGTCATCTTCGTCGTCGACGTGGAGCCCTTCGCTCGCTGCAGAGTGTTTCAAAGTTTACTGCAAGGGCTTGGTGAGCGAAGAATGGGTTAAAGATAAGCGGGTAAAGGTAGCTGGACTTGGGGTTGCAATTTGTGATTCTAGGGACTTCCTGATTTTTGAAGTGAAGAAGCCTCTTGAAGTATTTGAAAACGGCGGTGTCTTGCTGAGCAATGCATGTGCTGAACTGCGTGCCATGGCTGAAGGCCTTGATACCGCTTTTAACTTGGGATTACACAGGGTTACCTTTTCCTCTGACGACCACATGCTTTACCAATACGTCACTGGCAGAGTGCTACCAAGCCAGCATGATAGGTTTGTTGGTTTACTCGATCAGATATCTCATCTTCAAAGGAAATTTGTATATTGTGAACCATCACTTGTTGAACGAAACCGTGTTAGATATGCCTTTAAATCTGCAAGAGAAGCAATAGTTTCTCAAATCAAGTGGTCTGCAGAAAGTGATAAAGGCAAAAGCTTTAAGGAAACCTGTGCAATTTGTTTTGAAGATACTGATATTGAAAAGATGTTTTCAGTGAACCACTGCTTGCATAGATATTGTTGTTCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTTAACGGGATGATGGCAGAGTGCCCTCGTGAAGGTTGTAGATCTGATGTGACTGTTGATAGCTGCAACAGATTTTTAGCGCCAGAATTAGTTGAAGCTGTCAACGAAAGGATTAAGGAATCAGCTATCCCTGTCACAGAGAAATTTTATTGCCCATTTCCTAGGTGTTCTGCATTAATGTCAAAGCACGAGGTCTTAGAATACACTAAGACCACATATGTTGGAGCTGAAGAATGTGGAGTGAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAAGGTTCCGTGGCATAACAACATGACCTGCTCTGGCTATAAAAATTCCTATAATTTTCGTCAGGCAGAAGATTCTAAGCTAAAGTATCTTGCCTCCAAGAAACTGTGGCGGCAGTGTGTAAAGTGCAATCACATAATTGAACTAGCTGGAGGTTGCTATCATATTACTTGCAGATGTGGGTATGAATTCTGCTACACATGTGGAGCGAAGTGGGAGAACAAGAAAGCAACATGCTCTTGCCTGATCTGGGATGAGCGTAACATTATACGTAATCAACGTGGAAGAAGATGA | 1644 | 0.441 | MANSTHDEDELQNLLDEQTQELMMAKTLASDIDLAFELQMQEAVNSSLGSQTPVSPPYAVISSDEEKDGGFLGLAATLMLEEVHRLPQEFKDLELCQAEMTKMREDLDRRVFDQTFARDILNIPEYQWEKYGDNYHRPYYVDGQSSSSSSTWSPSLAAECFKVYCKGLVSEEWVKDKRVKVAGLGVAICDSRDFLIFEVKKPLEVFENGGVLLSNACAELRAMAEGLDTAFNLGLHRVTFSSDDHMLYQYVTGRVLPSQHDRFVGLLDQISHLQRKFVYCEPSLVERNRVRYAFKSAREAIVSQIKWSAESDKGKSFKETCAICFEDTDIEKMFSVNHCLHRYCCSCMKQHVEVKLLNGMMAECPREGCRSDVTVDSCNRFLAPELVEAVNERIKESAIPVTEKFYCPFPRCSALMSKHEVLEYTKTTYVGAEECGVRKCMKCHRFFCINCKVPWHNNMTCSGYKNSYNFRQAEDSKLKYLASKKLWRQCVKCNHIIELAGGCYHITCRCGYEFCYTCGAKWENKKATCSCLIWDERNIIRNQRGRR | 547 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr1g03483 | 547 | SMART | ibrneu5 | 474 | 531 | IPR002867 | GO:0008270 | |
Accr1g03483 | 547 | SMART | ibrneu5 | 388 | 461 | IPR002867 | GO:0008270 | |
Accr1g03483 | 547 | CDD | BRcat_RBR_unk | 401 | 464 | - | - | |
Accr1g03483 | 547 | SUPERFAMILY | RING/U-box | 474 | 538 | - | - | |
Accr1g03483 | 547 | FunFam | RBR-type E3 ubiquitin transferase | 459 | 547 | - | - | |
Accr1g03483 | 547 | Gene3D | - | 459 | 547 | - | - | |
Accr1g03483 | 547 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 280 | 535 | IPR031127 | GO:0004842|GO:0016567 | |
Accr1g03483 | 547 | ProSiteProfiles | TRIAD supradomain profile. | 317 | 535 | IPR044066 | - | |
Accr1g03483 | 547 | SUPERFAMILY | RING/U-box | 319 | 401 | - | - | |
Accr1g03483 | 547 | ProSitePatterns | Zinc finger RING-type signature. | 339 | 348 | IPR017907 | - | |
Accr1g03483 | 547 | ProSiteProfiles | Zinc finger RING-type profile. | 321 | 365 | IPR001841 | - | |
Accr1g03483 | 547 | FunFam | RBR-type E3 ubiquitin transferase | 161 | 304 | - | - | |
Accr1g03483 | 547 | CDD | Rcat_RBR_unk | 487 | 522 | - | - | |
Accr1g03483 | 547 | Coils | Coil | 1 | 28 | - | - | |
Accr1g03483 | 547 | FunFam | RBR-type E3 ubiquitin transferase | 316 | 401 | - | - | |
Accr1g03483 | 547 | Gene3D | - | 161 | 308 | IPR036397 | GO:0003676 | |
Accr1g03483 | 547 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 314 | 403 | IPR013083 | - | |
Accr1g03483 | 547 | Pfam | IBR domain, a half RING-finger domain | 404 | 461 | IPR002867 | GO:0008270 | |
Accr1g03483 | 547 | Pfam | IBR domain, a half RING-finger domain | 479 | 529 | IPR002867 | GO:0008270 | |
Accr1g03483 | 547 | Pfam | Reverse transcriptase-like | 180 | 300 | IPR002156 | GO:0003676|GO:0004523 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr1g03483 | Accr-Chr1 | 71319476 | 71321787 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr1g03483 | 154 | 520 | C3H Transcription Factor Family | AT2G19610 | 35.405 | 3.03e-75 | 243 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr1g03483 | - | - | qsa:O6P43_000295 | 743.806 |