Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03483 ATGGCGAATTCAACCCACGACGAAGACGAGCTCCAAAACCTACTTGATGAGCAAACCCAAGAATTGATGATGGCTAAAACACTAGCCTCCGATATCGATTTGGCCTTCGAACTGCAAATGCAAGAAGCGGTTAATTCGTCTCTCGGTTCTCAAACCCCTGTTTCACCCCCTTATGCTGTCATTTCCTCCGATGAAGAAAAAGATGGCGGCTTTCTGGGCTTGGCGGCCACGCTTATGCTGGAAGAAGTTCACAGGCTCCCGCAAGAGTTTAAGGACCTCGAACTATGCCAAGCAGAGATGACGAAGATGAGAGAAGATCTGGACCGTCGGGTTTTCGATCAGACTTTCGCGAGAGACATTCTGAATATTCCCGAGTACCAGTGGGAAAAGTATGGCGACAATTACCACAGGCCCTACTATGTTGACGGACAATCGTCATCTTCGTCGTCGACGTGGAGCCCTTCGCTCGCTGCAGAGTGTTTCAAAGTTTACTGCAAGGGCTTGGTGAGCGAAGAATGGGTTAAAGATAAGCGGGTAAAGGTAGCTGGACTTGGGGTTGCAATTTGTGATTCTAGGGACTTCCTGATTTTTGAAGTGAAGAAGCCTCTTGAAGTATTTGAAAACGGCGGTGTCTTGCTGAGCAATGCATGTGCTGAACTGCGTGCCATGGCTGAAGGCCTTGATACCGCTTTTAACTTGGGATTACACAGGGTTACCTTTTCCTCTGACGACCACATGCTTTACCAATACGTCACTGGCAGAGTGCTACCAAGCCAGCATGATAGGTTTGTTGGTTTACTCGATCAGATATCTCATCTTCAAAGGAAATTTGTATATTGTGAACCATCACTTGTTGAACGAAACCGTGTTAGATATGCCTTTAAATCTGCAAGAGAAGCAATAGTTTCTCAAATCAAGTGGTCTGCAGAAAGTGATAAAGGCAAAAGCTTTAAGGAAACCTGTGCAATTTGTTTTGAAGATACTGATATTGAAAAGATGTTTTCAGTGAACCACTGCTTGCATAGATATTGTTGTTCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTTAACGGGATGATGGCAGAGTGCCCTCGTGAAGGTTGTAGATCTGATGTGACTGTTGATAGCTGCAACAGATTTTTAGCGCCAGAATTAGTTGAAGCTGTCAACGAAAGGATTAAGGAATCAGCTATCCCTGTCACAGAGAAATTTTATTGCCCATTTCCTAGGTGTTCTGCATTAATGTCAAAGCACGAGGTCTTAGAATACACTAAGACCACATATGTTGGAGCTGAAGAATGTGGAGTGAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAAGGTTCCGTGGCATAACAACATGACCTGCTCTGGCTATAAAAATTCCTATAATTTTCGTCAGGCAGAAGATTCTAAGCTAAAGTATCTTGCCTCCAAGAAACTGTGGCGGCAGTGTGTAAAGTGCAATCACATAATTGAACTAGCTGGAGGTTGCTATCATATTACTTGCAGATGTGGGTATGAATTCTGCTACACATGTGGAGCGAAGTGGGAGAACAAGAAAGCAACATGCTCTTGCCTGATCTGGGATGAGCGTAACATTATACGTAATCAACGTGGAAGAAGATGA 1644 0.441 MANSTHDEDELQNLLDEQTQELMMAKTLASDIDLAFELQMQEAVNSSLGSQTPVSPPYAVISSDEEKDGGFLGLAATLMLEEVHRLPQEFKDLELCQAEMTKMREDLDRRVFDQTFARDILNIPEYQWEKYGDNYHRPYYVDGQSSSSSSTWSPSLAAECFKVYCKGLVSEEWVKDKRVKVAGLGVAICDSRDFLIFEVKKPLEVFENGGVLLSNACAELRAMAEGLDTAFNLGLHRVTFSSDDHMLYQYVTGRVLPSQHDRFVGLLDQISHLQRKFVYCEPSLVERNRVRYAFKSAREAIVSQIKWSAESDKGKSFKETCAICFEDTDIEKMFSVNHCLHRYCCSCMKQHVEVKLLNGMMAECPREGCRSDVTVDSCNRFLAPELVEAVNERIKESAIPVTEKFYCPFPRCSALMSKHEVLEYTKTTYVGAEECGVRKCMKCHRFFCINCKVPWHNNMTCSGYKNSYNFRQAEDSKLKYLASKKLWRQCVKCNHIIELAGGCYHITCRCGYEFCYTCGAKWENKKATCSCLIWDERNIIRNQRGRR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03483 547 SMART ibrneu5 474 531 IPR002867 GO:0008270
Accr1g03483 547 SMART ibrneu5 388 461 IPR002867 GO:0008270
Accr1g03483 547 CDD BRcat_RBR_unk 401 464 - -
Accr1g03483 547 SUPERFAMILY RING/U-box 474 538 - -
Accr1g03483 547 FunFam RBR-type E3 ubiquitin transferase 459 547 - -
Accr1g03483 547 Gene3D - 459 547 - -
Accr1g03483 547 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 280 535 IPR031127 GO:0004842|GO:0016567
Accr1g03483 547 ProSiteProfiles TRIAD supradomain profile. 317 535 IPR044066 -
Accr1g03483 547 SUPERFAMILY RING/U-box 319 401 - -
Accr1g03483 547 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Accr1g03483 547 ProSiteProfiles Zinc finger RING-type profile. 321 365 IPR001841 -
Accr1g03483 547 FunFam RBR-type E3 ubiquitin transferase 161 304 - -
Accr1g03483 547 CDD Rcat_RBR_unk 487 522 - -
Accr1g03483 547 Coils Coil 1 28 - -
Accr1g03483 547 FunFam RBR-type E3 ubiquitin transferase 316 401 - -
Accr1g03483 547 Gene3D - 161 308 IPR036397 GO:0003676
Accr1g03483 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 403 IPR013083 -
Accr1g03483 547 Pfam IBR domain, a half RING-finger domain 404 461 IPR002867 GO:0008270
Accr1g03483 547 Pfam IBR domain, a half RING-finger domain 479 529 IPR002867 GO:0008270
Accr1g03483 547 Pfam Reverse transcriptase-like 180 300 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03483 Accr-Chr1 71319476 71321787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03483 154 520 C3H Transcription Factor Family AT2G19610 35.405 3.03e-75 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03483 - - qsa:O6P43_000295 743.806