Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03473 ATGATGCCTGCAGATTCCCTTTCTCTTCCTTCCACCGTTCACACCTTGGTCGACCCAAACTCCAACCCTAACCCTAATTCAAATCCACTCAAGAAAAGGAGAAATCTCCCCGGAACACCAGATCCAGATGCGGAAGTGATAGCACTGTCGCCAAAGTCCCTCATGGCGACGAACCGTTTCATATGCGAAATCTGCAAAAAGGGCTTCCAGAGAGACCAGAACTTGCAGCTGCACCGCCGTGGCCACAATCTTCCCTGGAAGCTCCGGCAGAGGACCAACAAAGAAGAAGTGAGGAAGAAGGTGTATGTCTGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGTGACCTCACCGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAAAAGTGGAAGTGCGATAAATGCTCCAAGAAGTATGCGGTTCAATCCGACTGGAAAGCCCATAGCAAGATTTGTGGCACTCGAGAGTACAAATGTGACTGTGGCACCATTTTCTCCAGGAAGGACAGCTTCATTACCCACAGAGCTTTCTGTGACGCCCTGGGGGAAGAAAGTGCGAGAACAATAACAAGAGTACCTTCAGCTTTTAATAACCTGATGAGAAGTGACCATTTGATGATGAGCATGAATCAGCAAACACCCCGAATAATCCCTGAGATATTTCCCGGGTTTCACTCGGAATTTGGAGGTGGTTCCGAAGGAGCATTGGGGAATTTCGGTCAGCTCATTAATAACCATCACCTCAGCGTGGGAAGCAACAACAATTTGAATTCTTTAGTTCAAGGGGTGGACATGTTTGCGACATCAACGCATGAGACACAGTGGGTTAACCGATACCCATCAGAAGCAGAAGCATCAATTACAAGTGCCAACAACATGTGTGTGTCTGGAAAAGTGCCACATGGACTGAAGCAAGAACCAGAAGAAAACAACAAAGCAGAGTTGTCGCATAGTATAGGCGCTTTGTACTCATCATCGTGTCTTCAGATTCAGAACCCCCAAGCAGGAGGTGGAGCGAGTCACATGTCAGCCACTGCTCTCTTGCATAAAGCAGCTCAAATCGGATCTTCAACCACTAACAATGTCGTCAACCACTTTGGATCCGCGGTTTTAAACTCCTCCAACAACAACGTCACTAACCTTGACCTTCACAAAATTTTCAACCAAACGAATAACAAAAGTACCAACCTTGGAGGTAGGTTTCTGTTAAATGACTCGTTTGCTAGCACCACCAAGGAGCTAGGTTTAACCAGAGACTTTCTGGGCGTTGGAGGAGAGTCTATGAGCGGACCATTTCTGGAGCAAGAGTTAGCCACGTTCTATACAATAGGCTCAGCCTCAGCTTCGGCCTTGGACCTGAGTCAGTACGGTGCGCATCACTGA 1404 0.4822 MMPADSLSLPSTVHTLVDPNSNPNPNSNPLKKRRNLPGTPDPDAEVIALSPKSLMATNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTNKEEVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALGEESARTITRVPSAFNNLMRSDHLMMSMNQQTPRIIPEIFPGFHSEFGGGSEGALGNFGQLINNHHLSVGSNNNLNSLVQGVDMFATSTHETQWVNRYPSEAEASITSANNMCVSGKVPHGLKQEPEENNKAELSHSIGALYSSSCLQIQNPQAGGGASHMSATALLHKAAQIGSSTTNNVVNHFGSAVLNSSNNNVTNLDLHKIFNQTNNKSTNLGGRFLLNDSFASTTKELGLTRDFLGVGGESMSGPFLEQELATFYTIGSASASALDLSQYGAHH 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03473 467 Gene3D Classic Zinc Finger 39 111 - -
Accr1g03473 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 437 IPR031140 -
Accr1g03473 467 Gene3D Classic Zinc Finger 112 193 - -
Accr1g03473 467 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Accr1g03473 467 SMART c2h2final6 60 82 IPR013087 -
Accr1g03473 467 SMART c2h2final6 102 132 IPR013087 -
Accr1g03473 467 SMART c2h2final6 137 157 IPR013087 -
Accr1g03473 467 MobiDBLite consensus disorder prediction 1 43 - -
Accr1g03473 467 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Accr1g03473 467 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Accr1g03473 467 MobiDBLite consensus disorder prediction 8 33 - -
Accr1g03473 467 FunFam protein indeterminate-domain 12-like 39 108 - -
Accr1g03473 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03473 Accr-Chr1 71227785 71229759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03473 31 440 IDZ Gene Family AT3G45260 48.478 8.33e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g03473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03473 K25870 - gmx:100781896 452.981