Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03461 ATGAGTTCTGAGGAAAAGGCTGTGGGTGAAGGCCATCACCCTGCTTCTTGCCTTAGAACGGTTTCTCTTCCAGTTCCTAAGGTTGATGATCCAATGGGTATGCCTGAGGAATCAACATGTGCCCGTCATTGGAAGCGGCCTAATCTTCTTCTAGAAATACCCCCAAGAACATCGGAAGAGCGTTGTCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCAAGTCTCACTCCCACTCCCAAGAGAGTCAATTTTCTTATGACTTCACGCTCTGTTGATGACCCGATTCATAATTGTCCCGGGCCTTCCGCGTCAAGAGGCAAACCATCCATTAAAAGTATCCTACCAAAGTTGAACTTCAAGCGTAAGACATCATCAGATATTGAGAAAGCTTTTACTGCAGCTCCAGAGAGCTCCTCTTCAGTCCCTCGAGAAAAGCTTTCAATTGCATCATCATTGTCCCTTACCAAGATATTTACACCTAGAATTAAGAGAACGTCATCGTTACCAGTAGATGAACTTCATTCCAACTCAAAATCTGTTCATGCTGAAAGTGTTGGTGGATCTCCATATAGAACAAAGGTGCAGACACAGATAGCTCGCTCTCAGTCGGTACCTCTCACTGATCTAGATAAGGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACTCCTCATGTGAAGGGAAAAAAGGAATTGTTGGCCACATCCCCATCCAAGGATACTGAAAAGAATGATGGTGACGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGTGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTCGCTCTGGCACACCAAGAATGTGTCATTAAATGGTTCAGTATCAAAGGCAACAAGACCTGTGATGTGTGCAAGCAGGAGGTGCAGAACCTACCTGTCACACTCTTAAGGATCCAAAATGCAGTAACTCAGAATGCGGGGGCTAATAGATCTCTGCAGGAAGATGCAGGTGCAGGTGCATACAGGGTTTGGCAGGAAGTTCCAGTGCTTGTTATTGTGAGTATGCTGGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCGTTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAATAGCAGGTTCATCTGGTTTTATGCATCCTCCCAATTTGCTCTTGTGGTTCTTTTCGCACATATATTTTACTCATTGGTTCACGTGCAGGCAGTTTTGGCAATCCTTCTGGCAACATTTGCTGGGTTTGGTGTGGTGATGAGCGGGAGCTCTGTTCTTGTTGAAATTGCTCGATGGAGAAGAAGATGGCTGGCTTCATCAGAGCAGCATCAAGCACGTTCTAGCCCTCCGAGCGGCGGTAATCAATAA 1464 0.4488 MSSEEKAVGEGHHPASCLRTVSLPVPKVDDPMGMPEESTCARHWKRPNLLLEIPPRTSEERCQDFVGIKMPMTPSLTPTPKRVNFLMTSRSVDDPIHNCPGPSASRGKPSIKSILPKLNFKRKTSSDIEKAFTAAPESSSSVPREKLSIASSLSLTKIFTPRIKRTSSLPVDELHSNSKSVHAESVGGSPYRTKVQTQIARSQSVPLTDLDKGIRRMDSFFRVIPSTPHVKGKKELLATSPSKDTEKNDGDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECVIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQNAVTQNAGANRSLQEDAGAGAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWFYASSQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGVVMSGSSVLVEIARWRRRWLASSEQHQARSSPPSGGNQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03461 487 CDD RING_CH-C4HC3_MARCH 265 313 - -
Accr1g03461 487 SMART ringv_2 264 313 IPR011016 GO:0008270
Accr1g03461 487 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Accr1g03461 487 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Accr1g03461 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Accr1g03461 487 PANTHER OS02G0165000 PROTEIN 34 478 - -
Accr1g03461 487 MobiDBLite consensus disorder prediction 232 256 - -
Accr1g03461 487 SUPERFAMILY RING/U-box 261 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03461 Accr-Chr1 71161152 71165740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03461 251 319 C3H Transcription Factor Family AT2G37950 42.857 4.80e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03461 - - gmx:100815566 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03461 1 71161152 71165740 Accr13g00285 13 2773980 2777476 CCT
Accr1g03461 1 71161152 71165740 Accr1g03461 1 71161152 71165740 ECH