Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03456 ATGAGTAAAGACGTGGAAGTTGAAGTTGCAGAGCAAAGAGAGATGACGGTGAAAGACTACCATGACCCGCCTCCGGCGCCGTTGTTCGATCCGGAAGAGATAACCAAGTGGTCACTATACAGAGCCGTCATAGCGGAGTTCATCGCAACCCTTCTCTTCCTCTACGTAACGGTGCTGACCATCATTGGGAACAAGCACCAGACTTCCGGCAGCACACCTGATGCCGCCTGCGACGGAGTTGGGGTACTTGGCATCGCCTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGAATCTCTGGAGGACACATAAACCCAGCGGTGACATTCGGGCTGTTCCTGGGAAGGAAGGTATCGCTGATAAGGGCTGTGTTGTATATCTTAGCACAAATGGCGGGTGCTATCTGTGGGACTGGACTGGCCAAGGCCTTCCAGAAATCGTACTACAACAGGTATGGAGGTGGGGCTAATTACGTTCAAGATGGTTACAGTAATGGTACGGCTTTGGGTGCTGAGATCATTGGGACCTTCGTTCTCGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAACGCCAGAGACTCCCATGTTCCTGTCTTGGCACCACTGCCCATTGGATTCGCCGTGTTCATGGTTCACTTGGCTACCATCCCAGTTACCGGTACTGGCATTAACCCAGCAAGAAGTTTCGGCGCTGCTGTTATCTTCAACAACGACAAGATCTGGGATGATCAATGGATATTCTGGGTTGGACCAGCAATTGGAGCTGCGGCGGCTGCATTCTATCACCAACACATTCTGAGAGCTACAGCCATAAAAGCTCTTGGCTCTTTCAGGAGCAACGCTTAA 864 0.5185 MSKDVEVEVAEQREMTVKDYHDPPPAPLFDPEEITKWSLYRAVIAEFIATLLFLYVTVLTIIGNKHQTSGSTPDAACDGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYILAQMAGAICGTGLAKAFQKSYYNRYGGGANYVQDGYSNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIFNNDKIWDDQWIFWVGPAIGAAAAAFYHQHILRATAIKALGSFRSNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03456 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Accr1g03456 287 CDD MIP 41 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 Gene3D Glycerol uptake facilitator protein. 26 287 IPR023271 -
Accr1g03456 287 FunFam Probable aquaporin PIP1-2 26 287 - -
Accr1g03456 287 Pfam Major intrinsic protein 33 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 NCBIfam MIP family channel protein 45 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Accr1g03456 287 SUPERFAMILY Aquaporin-like 33 273 IPR023271 -
Accr1g03456 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 10 276 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03456 Accr-Chr1 71138775 71139995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03456 1 285 Major Intrinsic Protein MIP AT5G60660 78.246 2.08e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03456 K09872 - gmx:100818032 492.656