Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03449 ATGTCAGAGGACATTACAAACATGAAGGATCCTTTGTTTTTGGACAAGAGTTTCAATGGTCTACCGGATGAAATCTTTGATGATGTCATAAAGTTCTTTGATTTTCCGCTGGAAGATGTGGATGCTAACATTGCGGAAGAAGAAGACTGGGATGCCCAATTTAAACGCATCGAAGAGCCATCTTTTGATGTGTTCTCGGTATCATCGTCTGAATTGTCCGGTAAAACTCAAAATGACAATTTACACCTTGGGAATGGGAGGACTTCCTCTGCTTGTAAGGAGACTTCAGCCCCAGTTGCCAAGCCTAACATCTACCTCAAAAAGAAGGATCAGCCCCAGTTTCGAACCTACAGCCCAGTTTCTGTATTTGAAAGCACTACATCTTCCTCTGGTGAAAGTTCCAACTTTGAACTGCCCATCATCCCGGGGAAGCGCCCTCGAGGGAGGCGCCGGCGTCTCTCCAGCTTCACCTCTCTATTGCCAATCCGGTTGGCACTGCGAAAATCTCAAAAGGGAGCTGCCGCAGTAGAGCTATTAAATGGGGTGAAGAGGAAGCAGAGGACGAAGGATCTCTCCATTCTCTCAAGTGAAGTCAAGATGAAGAAATCATCATTAAGAGATTCAGGTGCGCCTACAAAATGCATGCATTGTGAAGCGACCAAGACCCCACAGTGGAGGGAGGGACCTATGGGTCCAAAGACTCTGTGTAATGCATGTGGGGTTCGATACAGGTCAGGTCGCTTGTTCCCCGAATACCGCCCTGCGGCTAGTCCCACTTTTGTACCATCTCTGCATTCCAACTCTCACAAGAAGGTCATAGAGATGAGAAACTCGGTCATGCAAGAGTCTGGGGCTTCTATTTTGGGTTTGTCATCGATCTAA 882 0.4717 MSEDITNMKDPLFLDKSFNGLPDEIFDDVIKFFDFPLEDVDANIAEEEDWDAQFKRIEEPSFDVFSVSSSELSGKTQNDNLHLGNGRTSSACKETSAPVAKPNIYLKKKDQPQFRTYSPVSVFESTTSSSGESSNFELPIIPGKRPRGRRRRLSSFTSLLPIRLALRKSQKGAAAVELLNGVKRKQRTKDLSILSSEVKMKKSSLRDSGAPTKCMHCEATKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPSLHSNSHKKVIEMRNSVMQESGASILGLSSI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03449 293 Gene3D - 205 283 IPR013088 GO:0006355|GO:0008270
Accr1g03449 293 ProSiteProfiles GATA-type zinc finger domain profile. 208 244 IPR000679 GO:0006355|GO:0043565
Accr1g03449 293 SMART GATA_3 208 258 IPR000679 GO:0006355|GO:0043565
Accr1g03449 293 FunFam GATA transcription factor 204 286 - -
Accr1g03449 293 ProSitePatterns GATA-type zinc finger domain. 214 239 IPR000679 GO:0006355|GO:0043565
Accr1g03449 293 CDD ZnF_GATA 213 260 IPR000679 GO:0006355|GO:0043565
Accr1g03449 293 PANTHER GATA TRANSCRIPTION FACTOR 42 279 - -
Accr1g03449 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 210 271 - -
Accr1g03449 293 Pfam GATA zinc finger 214 247 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03449 Accr-Chr1 71066725 71070278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03449 18 288 C2C2-Gata Transcription Factor Family AT1G08010 36.986 1.17e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr1g03449 GATA 5.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03449 - - gmx:100778675 285.804