Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03427 ATGGTGTCGGACGCGAGTAAGAAGAAGGCAGCACAGAAGAAGGCCGCGGCCGCTGCCAAGAGAGGAGGGAAGGCCGCGGCCACTGCTGCTTCATCAAAGGCGGCGGCATCGGAGGTTCACAAGGCTGCCGATAAGCTTGCCAATGGAGTCGGTGAAATCCAGATATCCGATCGCACGTGCACCGGCGTCCTCTGTTCACATCCTCTTTCGAGGGATATTCGGATAGAGTCTCTATCAGTTACTTTTCATGGACATGATCTCATAGTTGATTCTGAGTTGGAGCTAAATTATGGAAGGCGCTATGGGCTACTTGGATTAAATGGTTGTGGAAAATCGACTCTCCTTACGGCAATAGGTTGTCGGGAGCTTCCTATTCCTGATCACATGGATATTTATCACCTTACTCGAGAAATTGAAGCTTCTGACATGTCTGCGTTGCAGGCTGTCATAAGCTGTGATGAAGAAAGGTTGAAATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAGGATGATGGAGGTGGTGAAAGTCTTGAACGTGTTTATGAACGATTGGAAGCTATGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACATGGCCTTGGTTTTAACAAGCAGATGCAAGCAAAGAAGACACGTGATTTTTCTGGTGGTTGGAGAATGAGGATAGCTTTAGCACGTGCTCTGTTCATGAAACCAACCATTCTTTTACTTGACGAACCAACTAATCATTTAGATCTGGAAGCATGTGTGTGGCTGGAGGAAAATTTGAAGAAGTTTGACCGCATTCTGGTTGTTGTTTCACATTCTCAAGATTTTCTCAATGGTGTTTGCACAAACATCATCCACATGCAAAACAAAAAGCTGAAACTCTACACTGGTAACTTCGATCAATATGTTCAGACACGTGCTGGATTGGAAGAAAACCAGATGAAGCAGTACAGGTGGGAGCAGGAGCAGATTGCTTCGATGAAGGAATATATTGCTCGATTTGGGCATGGATCCGCCAAGCTAGCTCGCCAAGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGGGGTGGACTTACTGAGAAGGTTGTCATGGACAAAGTCTTGGTATTCCGCTTTGCTGATGTGGGAAAGCTCCCCCCACCCGTGCTTCAGTTTGTTGAGGTGACTTTTGGCTACACCCCAGAAAATCTAATCTACAAAAACCTTGACTTTGGGGTGGATTTAGACTCTAGGATTGCACTCGTTGGACCCAATGGAGCTGGGAAGAGTACACTGCTGAAGCTAATGACTGGGGAACTGACTCCTCTTGATGGCATGGTCCGACGACACAACCATCTTCGCATAGCTCAATTTCATCAGCACTTGGCTGAAAAGCTAGACATGGAAATGCCTGCCCTCCAGTTTATGATGAAAGAGTACCCTGGAAATGAGGAAGAGAAAATGAGGGCAGCCATTGGGAAGTTTGGACTGTCCGGTAAAGCCCAGGTGATGCCCATGAAGAATTTATCAGATGGGCAGAGGAGCCGGGTAATTTTTGCTTGGTTAGCTTGGAGGCAGCCTCACTTGCTGCTTCTGGATGAACCGACTAACCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCCTTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGTCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCAGATCAAGCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGAGCATCTAAGGGCAAAGGCAGGCTTATCTGATTGA 1800 0.4656 MVSDASKKKAAQKKAAAAAKRGGKAAATAASSKAAASEVHKAADKLANGVGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALQAVISCDEERLKLEKEAETLAAQDDGGGESLERVYERLEAMDASTAEKRAAEILHGLGFNKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNFDQYVQTRAGLEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVMDKVLVFRFADVGKLPPPVLQFVEVTFGYTPENLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGELTPLDGMVRRHNHLRIAQFHQHLAEKLDMEMPALQFMMKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMEFKEHLRAKAGLSD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03427 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 73 313 IPR003439 GO:0005524
Accr1g03427 599 SMART AAA_5 409 597 IPR003593 GO:0016887
Accr1g03427 599 SMART AAA_5 97 299 IPR003593 GO:0016887
Accr1g03427 599 FunFam ATP-binding cassette sub-family F member 3 344 598 - -
Accr1g03427 599 FunFam Abc transporter f family member 1 73 337 - -
Accr1g03427 599 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 599 IPR003439 GO:0005524
Accr1g03427 599 CDD ABCF_EF-3 384 575 - -
Accr1g03427 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 578 IPR027417 -
Accr1g03427 599 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 20 594 - -
Accr1g03427 599 Pfam ABC transporter 91 245 IPR003439 GO:0005524
Accr1g03427 599 Gene3D - 352 597 IPR027417 -
Accr1g03427 599 Pfam ABC transporter 284 356 IPR032781 -
Accr1g03427 599 Pfam ABC transporter 400 531 IPR003439 GO:0005524
Accr1g03427 599 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Accr1g03427 599 CDD ABCF_EF-3 73 290 - -
Accr1g03427 599 Gene3D - 73 337 IPR027417 -
Accr1g03427 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 304 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03427 Accr-Chr1 70858022 70861507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03427 90 271 Calmodulin-binding Proteins AT2G36910 27.174 2.46e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03427 K06185 - gmx:100785099 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03427 1 70858022 70861507 Accr1g03427 1 70858022 70861507 ECH