Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03418 ATGCTCTCATTCCGTTCTTGCTTCTCTCCCCCATTCTTTCACCCCGTCAAGTCTCTCTTTCGTCTTGAATTTTCCCGCACACCCCCTAAAACCTTCGCGTTCAAGCCCATCCTCTTCCCGACACATAATCGCGGTCGCAGCATGTCGTCGCGACCGTCTGCCTTTGATGCTCTCATGTCAAGTGCTCGTGCCGCTGCAAAGAAGAAGCCCCAATCATCGTCGCCCAAGAAACGAAAAACCCAGGATTCTAATTCAACCCAAAACCCTAAACTCCTAAAGAGCACGGAAAGTACTGGTCAGTCTTCGGAACCCTGCAACGATACCAAATGCACTGACATTAAAGATTCCGAGAAGGCAGAAGAGCCGGCAAAAGAAGACTTGAGCAATGGTGGGCTGACAGCGTCAGATACTGCACTTGCGGCGAAGAGAACGCGCGTTGTAGGTTCTCATGAGAAGATTACAGAACTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTCGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACTCCCGAGGATCTGGTAGCTGTTGTTTATCTATCATCAAATAAGATTGCTCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCGATCATTAAGGCCCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTAGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAGGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGACAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATTTAATTCGTCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCCGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGCCTTCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGACGTGTAACTTCACTCCTGGTGTTCCAGTTGGACCCATGTTGTCTAAAGCAACTAAGGGTGTATCCGAAGTTCTAAATAAATTCCAAGGTGGAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTATATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTCCTTGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCGTTTCAGGTTCTCAGTACTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCGCTTTTGGGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTGGATAAAGATGCTACTTATGAACCTTCCAAGCGGTCACTTAACTGGCTAAAACTGAAGAAAGATTATCTTGATAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTTCTTGCTTGCTATGATAGCAATAGTGAAGAATTTCAAAGCATCTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGATGAACGTTCTGCCAGTCTACGTACCAAAGTGATTCCCAAACCAAAGCCTTATTATCGATATGCTGAGACGATCAATCCTGACGTATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGTCCTGTTCACCGTGCTGCAGTAGGCATCGTAGATTCGGATAAGGGAATATCTCTTCGGTTCCCTCGTCTTGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCCCAAAAGCACAATTACCAAAACAATGAGGATGATGAAGATTGA 2394 0.4353 MLSFRSCFSPPFFHPVKSLFRLEFSRTPPKTFAFKPILFPTHNRGRSMSSRPSAFDALMSSARAAAKKKPQSSSPKKRKTQDSNSTQNPKLLKSTESTGQSSEPCNDTKCTDIKDSEKAEEPAKEDLSNGGLTASDTALAAKRTRVVGSHEKITELKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKEKGDLGLVAKASRSSQSMMRKPDPLTIRKVFNTFRLIAKESGKDSQDKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPPSEIQSPLEEAAKIVKQVYSVLPLYDKIIPALLSGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQGGEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYAAFGEEPGFLQFATAITSTDVEEIQKFLDAAVDASCEGLIIKTLDKDATYEPSKRSLNWLKLKKDYLDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLDERSASLRTKVIPKPKPYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQKHNYQNNEDDED 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03418 797 FunFam DNA ligase 456 581 - -
Accr1g03418 797 Pfam DNA ligase N terminus 185 360 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr1g03418 797 Pfam ATP dependent DNA ligase C terminal region 656 767 IPR012309 GO:0003910|GO:0006281|GO:0006310
Accr1g03418 797 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 66 792 - -
Accr1g03418 797 Gene3D - 162 429 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr1g03418 797 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 419 637 - -
Accr1g03418 797 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 451 459 IPR016059 GO:0003909
Accr1g03418 797 Pfam ATP dependent DNA ligase domain 427 631 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr1g03418 797 Gene3D DNA ligase/mRNA capping enzyme 456 581 - -
Accr1g03418 797 MobiDBLite consensus disorder prediction 765 797 - -
Accr1g03418 797 MobiDBLite consensus disorder prediction 108 125 - -
Accr1g03418 797 CDD Adenylation_DNA_ligase_I_Euk 416 634 - -
Accr1g03418 797 MobiDBLite consensus disorder prediction 77 107 - -
Accr1g03418 797 NCBIfam ATP-dependent DNA ligase 243 782 IPR000977 GO:0003910|GO:0005524|GO:0071897
Accr1g03418 797 ProSiteProfiles ATP-dependent DNA ligase family profile. 533 669 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Accr1g03418 797 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 167 418 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Accr1g03418 797 SUPERFAMILY Nucleic acid-binding proteins 639 785 IPR012340 -
Accr1g03418 797 ProSitePatterns ATP-dependent DNA ligase signature 2. 605 631 IPR016059 GO:0003909
Accr1g03418 797 MobiDBLite consensus disorder prediction 61 132 - -
Accr1g03418 797 Gene3D - 636 797 IPR012340 -
Accr1g03418 797 FunFam DNA ligase 162 429 - -
Accr1g03418 797 Gene3D - 437 635 - -
Accr1g03418 797 FunFam DNA ligase 636 795 - -
Accr1g03418 797 CDD OBF_DNA_ligase_I 639 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03418 Accr-Chr1 70746836 70754336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03418 46 793 Core DNA Replication Machinery Family AT1G08130 69.894 0.0 1081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03418 K10747 - qsa:O6P43_028431 1194.1