Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03417 ATGCTCAAAATGGATGCTCACCAAGATCCTCTGGTGCAAATCGACGACTTCCAGCTTCATGACTTCATCGAAGACACCAATTTCGATCAGTTCATCAATTTGCTCCGCGGGGAGAATGAACACTCATTCTGTAACTTTGATTCTGACCTTATCAATGTCTGCTTAGCTGATACCCAGTTTCTTCCATTACCTGCAAACCCTTTTGAGTCTAATAATGCTGCTGCGAATGCTTGTGATCCAAGCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAAGTGAAGGGAGGAGGAGGAGAAGAGAATGATTCTTCCACTGCAACAACAAGCGCCACCACTGAAACCACAACGCGTGATAACGCCAAGCACAAGTCCAAAACTGATCGGTCCAAGACTCTGATTTCTGAAAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTGCTTCGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGAGGGCTAAGAAGCTTAAGGTTGAGATCGAAGGTCTTGAAGCATCTCTGCTAGCGCCAGAAAACGATCATCGATCAGCTAAAATCTCCATGAAGGTTCAAAACAACAAAATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATGGTTCAAGTGGAGGAAAGAGGGTTTTATGTGAAATTGGTGTGTAATAAAGGAGAAGGAGTGGCTACCTCCCTGTACAAGGCTCTCGAGTCCCTAGCAGGCTTCAACGTTCAGAATTCAAACTTGGCCACAGTTGCTGACAGATTTCTATTAACATTTACATTGAATGTGAAAGGTTGCGAGACAGAAATAAACCAGCAAAATCTGAAGCTGTGGGTGGCAGGCGCTCTTCTAAATCAAGGCTTCGAATTTATTACTACTTTCCATGCTTGA 954 0.4476 MLKMDAHQDPLVQIDDFQLHDFIEDTNFDQFINLLRGENEHSFCNFDSDLINVCLADTQFLPLPANPFESNNAAANACDPSSTLSSFSCFDGEVKGGGGEENDSSTATTSATTETTTRDNAKHKSKTDRSKTLISERRRRGRMKEKLYALRASVPNITKMDKASIVGDAVAYVQELQERAKKLKVEIEGLEASLLAPENDHRSAKISMKVQNNKINYPICKKIMQMDMVQVEERGFYVKLVCNKGEGVATSLYKALESLAGFNVQNSNLATVADRFLLTFTLNVKGCETEINQQNLKLWVAGALLNQGFEFITTFHA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03417 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 27 307 - -
Accr1g03417 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Accr1g03417 317 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 123 193 - -
Accr1g03417 317 MobiDBLite consensus disorder prediction 101 116 - -
Accr1g03417 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 195 IPR036638 GO:0046983
Accr1g03417 317 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
Accr1g03417 317 Gene3D - 117 193 IPR036638 GO:0046983
Accr1g03417 317 SMART finulus 133 182 IPR011598 GO:0046983
Accr1g03417 317 Coils Coil 173 193 - -
Accr1g03417 317 MobiDBLite consensus disorder prediction 117 138 - -
Accr1g03417 317 MobiDBLite consensus disorder prediction 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03417 Accr-Chr1 70743482 70745238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03417 4 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.050 1.22e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g03417 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03417 K26214 - gmx:100805451 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03417 1 70743482 70745238 Accr1g03417 1 70743482 70745238 ECH