Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03413 ATGGAAGGCACGGAGGAATTACTGGAGTTTGTGGGCCCGTCTAATGAGCATGGCACCGTCGTCACGCACATAGCCAAGGGCAAGCGTACCAAGAGGAGGCCTTGTGCCCTCGCCACCGCCCTCACCTCTAGCTCGTCAAGCGTCTCGGGGGAACACCTCAGCGCCGGTGCAGATTATGCCTCCATTTCCTCCACCACAACAACCACTACTCATAATTATGACGACAGCACTGAGGAAGAGGAAGACATGGCTAACTGTTTAATTCTCTTGGCTCAGGGCGGCGATTCCCACCATAATCTTAAGCATCGACCTCAATCTCATCAAGCCGCCAGAACGGAACCAGGAGGCAGCCGGAGATTCGCTGACATGTCCACCGTCACCGCCGGTGCCGCCAAAGTTGGTTTGTTTGTCTATGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCGTTTCAAGCGTTGGGTGGGCACAGAGCCAGCCACAAAAGGCCAAGGCTGACGTTAGATGAGAAGAAACTGCCGCCGCAACTTATCAACAGTTATGAGATCGAAGAAGGCCGCCCGATGAAAAACAGCCCTCAGATTTCTCTTCAATTAGGCAATAATAACATCATGAATGGGATCGTGTCATCGATCAACAAGGCCAAGATTCACGAGTGTTCCATATGCGGGTCAGAATTCACGTCCGGGCAGGCATTGGGGGGCCACATGAGGAGGCATCGGCCAACCACTGCCGCGGGTGGTTCTCAGGCAAGCTATGGTGAAGTCGCCGGCGACAGGACGGTGGCTGCGGTGGAGGTGAAGCCAAAAGTACTGGCTTTAGATCTAAACCTGCCGGCGCCGGAAGAGGATCATCATCAGAGGGAATCCAAGTTTGAGGTGACGGCAAAAGAAAAACCATTGATGCTGTCTGCTCCGACGACGTCTTTGGTGGGCTGCCATTATTAG 945 0.5344 MEGTEELLEFVGPSNEHGTVVTHIAKGKRTKRRPCALATALTSSSSSVSGEHLSAGADYASISSTTTTTTHNYDDSTEEEEDMANCLILLAQGGDSHHNLKHRPQSHQAARTEPGGSRRFADMSTVTAGAAKVGLFVYECKTCNRSFPSFQALGGHRASHKRPRLTLDEKKLPPQLINSYEIEEGRPMKNSPQISLQLGNNNIMNGIVSSINKAKIHECSICGSEFTSGQALGGHMRRHRPTTAAGGSQASYGEVAGDRTVAAVEVKPKVLALDLNLPAPEEDHHQRESKFEVTAKEKPLMLSAPTTSLVGCHY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03413 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 244 IPR013087 -
Accr1g03413 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Accr1g03413 314 Pfam C2H2-type zinc finger 137 163 - -
Accr1g03413 314 Pfam C2H2-type zinc finger 217 241 - -
Accr1g03413 314 MobiDBLite consensus disorder prediction 96 118 - -
Accr1g03413 314 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Accr1g03413 314 Gene3D Classic Zinc Finger 136 239 - -
Accr1g03413 314 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Accr1g03413 314 SUPERFAMILY beta-beta-alpha zinc fingers 137 239 IPR036236 -
Accr1g03413 314 SMART c2h2final6 217 239 IPR013087 -
Accr1g03413 314 SMART c2h2final6 138 160 IPR013087 -
Accr1g03413 314 PANTHER ZINC FINGER PROTEIN ZAT5 63 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03413 Accr-Chr1 70686442 70687386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03413 15 314 C2H2 Transcription Factor Family AT2G28200 42.006 3.79e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g03413 zf-C2H2_6 3.6e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03413 - - pcin:129297388 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03413 1 70686442 70687386 Accr13g00378 13 3792085 3792843 CCT
Accr1g03413 1 70686442 70687386 Accr1g03413 1 70686442 70687386 ECH
Accr1g03413 1 70686442 70687386 Accr13g00378 13 3792085 3792843 ECH