Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03411 ATGATTTCAAGATCCACAGCTTCTGGTTTCCCAAATCCCTCACAAGACCAGTACAATTATATGTGTCCCCCTCCTGCTGCTGCTGCTTCTGCTGATAATAATAATCTGGTTTCAGCCCGTGTCGAATCAGCTCCTCCTTCTCAGTCAACCTCGCTCATGTTCAATCTCTCCGTCCTCAAAGAGAAGCTAACACATGTGCAGACACTCGCGGGTATTCTTATCTCCTCGGATCAGAATCAGAGCCAACAAGACTCAACGGCCTGCGCAACCTTAGCCAGCATGAATTCTATCATCCAGGAGTTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAATATCTCTCCCCCACCAGGTACTACTCATTGCACTGAATCCAACTTTGGCAATAATTACACGAGCATGCATAATAATAGTACAAATAACATAGCTCAACCAAGAGGGCAAGGTATATTCTCTAGTCCCGATGATCAAACCTTGGAATGGTTCGGTTGTGTAAGCTATGATAATAACAATAATTGCACTAGTAATAATAACAATAATCTCAAGGATGATGATCCGAGTGTTGGAATTAGTGAAACCAAGAGGGAAATGTGTCAAGGGGATGAAACCAATGAACCGAAGAATGAAGACATAATAGAATTGGATGCTGCTGATTTGTTGGCCAAGTACACGCATTACTGTCAAATTTGTGGGAAAGGGTTTAAAAGAGATGCGAATTTGAGGATGCATATGAGGGCTCATGGGGATGAGTACAAGACAAGTGCCGCTTTGAGCAATCCGATGAAGAATAGAGGCAAAGAATGTTCGATGAGCACGTTTAGGCCAAAGAAATACTCATGTCCACAACAAGGATGTAGGTGGAACCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGTGAAGAATCACTACAAGAGGAGTCATTGTCCGAAGATGTACGTGTGCAAGAGGTGCAATGTGAAGCATTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGAGATCTCAAGTGGCAGTGTTCGTGTGGTACGACGTTTTCGAGGAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTTGGCCATGCTCCAGCTGTCACTGGCTTGTCGTGTTCTGGAAAATTGGTGGAGCATCATCAGCAGGCGTTGCAATTGCAGGAAGATGTGTGTATGACATGA 1215 0.4436 MISRSTASGFPNPSQDQYNYMCPPPAAAASADNNNLVSARVESAPPSQSTSLMFNLSVLKEKLTHVQTLAGILISSDQNQSQQDSTACATLASMNSIIQEFIVTASSMMLTCQHMVLNISPPPGTTHCTESNFGNNYTSMHNNSTNNIAQPRGQGIFSSPDDQTLEWFGCVSYDNNNNCTSNNNNNLKDDDPSVGISETKREMCQGDETNEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRGKECSMSTFRPKKYSCPQQGCRWNQKHAKFQPLKSMICVKNHYKRSHCPKMYVCKRCNVKHFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVTGLSCSGKLVEHHQQALQLQEDVCMT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03411 404 ProSitePatterns Zinc finger C2H2 type domain signature. 233 253 IPR013087 -
Accr1g03411 404 FunFam Zinc finger protein 574 230 255 - -
Accr1g03411 404 Gene3D Classic Zinc Finger 227 255 - -
Accr1g03411 404 SUPERFAMILY beta-beta-alpha zinc fingers 229 256 IPR036236 -
Accr1g03411 404 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 43 382 IPR044300 GO:0010044|GO:0010447
Accr1g03411 404 SMART c2h2final6 284 317 IPR013087 -
Accr1g03411 404 SMART c2h2final6 322 344 IPR013087 -
Accr1g03411 404 SMART c2h2final6 231 253 IPR013087 -
Accr1g03411 404 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 258 IPR013087 -
Accr1g03411 404 Pfam Zinc finger, C2H2 type 231 253 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03411 Accr-Chr1 70669842 70671056 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03411 49 377 C2H2 Transcription Factor Family AT5G22890 50.000 1.92e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g03411 zf-C2H2 0.00011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03411 - - pcin:129316246 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03411 1 70669842 70671056 Accr1g03411 1 70669842 70671056 ECH