Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03406 ATGGCTATTGCTGGACTACATAATCTGTCTGTGCTTGACTCTTCTTTTCTTAGGGATTCCCATTCTCCATCACCTAGGAGGCGAGGAGATGGGGGGAGTGGAAGCACTCGATCAGCTTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCACGTGGTGGGCCAAGTCCAAGGAAGACCTGGTGATGGTTTACTTCAGCAAAGGAGTGATGAGTTCATCACTGACCTCTCACAGGCAAGTATGCCAAGTAGCCATGAGACGGGAGAGAGGCATGCAGTAGAAGATTCAATTTTGGGTGAGAATGAATGTGAAACATGGTCACAGTCACAGAGTCAGCATGAATCTCCTGATGAGCAGGAGGAATTAAACAATTCTGGTTGTGATAATTCTTCTGATCTTGGAGAAGTTGAAAGGGAAAGGGTGAGGCAAATTTTCAGGGAATGGATGAAAAGTGGTGATGGGGATCAAGCCACAAACATTCCCCAAGGTAATAGCAGTTCAAGATCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTGGGTACAACTGAGTAGCCAGGAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAAGTTGGTACCCAAATAGATCGAATTCGTGATGGGTTTGCTGTTAATCAGAATGAGGGTCAAACTGAGCATATGCGAAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTACTTGATATGCTTAAGAAGGCTGAGAAGGAAAGACAAAGAGAAGTTCAGGAATTATTGAACCATAGAGCTGTATCTCATTTCCCACATCGCAACCGCATTCAGGCGTTGCTCAGGGGTAGGTTCTTGAGAAATGACAGGTCAATTGATGCTAACCGGTCCACTTCGGTAGCTGAAAGTGAATTGGGCTTGCTGAGGCAAAAACAAACTGTATCAGGTCTAAGGGAAGGGTTTTTCTCTGGGAAGGACTGTTCTGGTGGCAGTCAAGCAACTTCCACTCTATCAGATACCTCATCTAACATTGGCATTGATAATAATTCAAATGAACAAACTGACTCCAGCAGTTTACATTCGGTCTCAATTGTACATTTTGAACAGTCTGAACCTACTGTTGGAGATAGTGTAGGAGTTGGGATCTTAGATGGTCAGAATTTTACACAAGAAACCATTACGGAAAATTTAGTTTGCCAAGACTCCACTGCTCGTATAGAAGGAAGGTTGTCACAGCTTTTGGAAAATGAGTCAAGAGATTGTCAATCGTCATACAGTGTTGGGACAGAAAGAAGAGATGATAGCAGGCGATATGTTGTTGGGATGACAGTTGAAGATACCAGTGATGGACTTATGCAACAAAATTGTCAGATTGAAGTTACAGAACATAGCAATATACTGGGATCTGGTGAGGTATATCCAGAAGAATTTCAGCCGAGTGTTATTAGAAATGATGATATCGGTTCATCAACTGATATTGATGTTGTGGAAGCCACTATGGAAGATAATGAAAATAGTTATGTTTCTACTGCTCTGGAAGAACAACAGCAGGAAGAACTTATTGAAAATGAAGGAAGTGATGGGCACCTGAGAAATGGCGCAGAGGAAAGTCTGGGTGATAATCAACCCCATGATACAGCCAGTGAGTGGCCTCATGACATTTTGAGCAATGAAGATAGGGAAAACTCTCATCTGCCGGAAGCCCCAGAAATGTGGCAAGAAGACGGTGGCTTTCAGGAGGCCGTGGAAAATTGGTTGGGTGGACCTTCGGATCATGACGTTGCTCCAGTTGGTAGAATTCATGGCTTTTATTTTCCAGATGATGACAATGTGAACAGCGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGTCATGCTCATGTTGAGTGGGAGCCGCAAGAAACGAGCCCTTCTTCTGCCTCAGTTGAACAGGACCTGGAGCAGTCCCGTAGGGATCGGATTGTTGGTCAGGAGGATGCTATCAACAGTCCACTTGATCAGCCCTCATCGCCAACACCTCCTCAACCTCTCTGGGAACGACATTCACGTCATGACAATTGGTCACGAGCTGACATGAATAATCAGCACCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGACTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGGCTTGTATGGATATGCAACTTGAGTTGCAGCGCTCAATAAGACAGGAGGTTTCTGCAGCACTTAATCGCTCAGCTGGTTCATCAGATATGCATGATCATGATTCTCCTGATGACAAGTCTAAATGGGAATGTGTGAGAAAAGGACTGTGCTGTATATGTTGCGAGAGCAATATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCACATGTTCAAAATGTGCCAATGAGTTGTTCCAAAGTAGGAGAAAGTGTCCAATGTGTCAAGCGCCCGTTGTGGAGGTGATACGTGCTTATTCTATTCTATAA 2586 0.4412 MAIAGLHNLSVLDSSFLRDSHSPSPRRRGDGGSGSTRSASILQMWREIEDEHVVGQVQGRPGDGLLQQRSDEFITDLSQASMPSSHETGERHAVEDSILGENECETWSQSQSQHESPDEQEELNNSGCDNSSDLGEVERERVRQIFREWMKSGDGDQATNIPQGNSSSRSEWLGETEQERVRIIREWVQLSSQERVISSGDNREEQSAEVGTQIDRIRDGFAVNQNEGQTEHMRRGIRKLCGRQVLLDMLKKAEKERQREVQELLNHRAVSHFPHRNRIQALLRGRFLRNDRSIDANRSTSVAESELGLLRQKQTVSGLREGFFSGKDCSGGSQATSTLSDTSSNIGIDNNSNEQTDSSSLHSVSIVHFEQSEPTVGDSVGVGILDGQNFTQETITENLVCQDSTARIEGRLSQLLENESRDCQSSYSVGTERRDDSRRYVVGMTVEDTSDGLMQQNCQIEVTEHSNILGSGEVYPEEFQPSVIRNDDIGSSTDIDVVEATMEDNENSYVSTALEEQQQEELIENEGSDGHLRNGAEESLGDNQPHDTASEWPHDILSNEDRENSHLPEAPEMWQEDGGFQEAVENWLGGPSDHDVAPVGRIHGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWEPQETSPSSASVEQDLEQSRRDRIVGQEDAINSPLDQPSSPTPPQPLWERHSRHDNWSRADMNNQHLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSAGSSDMHDHDSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANELFQSRRKCPMCQAPVVEVIRAYSIL 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03406 861 MobiDBLite consensus disorder prediction 655 708 - -
Accr1g03406 861 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 861 - -
Accr1g03406 861 CDD mRING-HC-C3HC5_NEU1 809 858 - -
Accr1g03406 861 MobiDBLite consensus disorder prediction 528 553 - -
Accr1g03406 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 859 IPR013083 -
Accr1g03406 861 Coils Coil 243 270 - -
Accr1g03406 861 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
Accr1g03406 861 MobiDBLite consensus disorder prediction 16 40 - -
Accr1g03406 861 MobiDBLite consensus disorder prediction 156 172 - -
Accr1g03406 861 Coils Coil 737 764 - -
Accr1g03406 861 MobiDBLite consensus disorder prediction 148 175 - -
Accr1g03406 861 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
Accr1g03406 861 MobiDBLite consensus disorder prediction 103 136 - -
Accr1g03406 861 SUPERFAMILY RING/U-box 808 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03406 Accr-Chr1 70612116 70615739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03406 809 855 C3H Transcription Factor Family AT3G06140 40.426 4.07e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03406 - - pcin:129315785 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03406 1 70612116 70615739 Accr13g00384 13 3844870 3848427 CCT
Accr1g03406 1 70612116 70615739 Accr1g03406 1 70612116 70615739 ECH