Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03396 ATGCCTCGCCGCGGCGGAAAGCAACCCCAGCACCAACCTTCTCCGGCGCCATCCCAACCGGCCCGGGGTCCAGATGTTGCTCCAGCCAGGCCACAAGGCGCCGCTCCCTCTGCTGCTCCGACTGATGAGTTGGGGCAGCTAACATTGCAGTCTCCGGCGCCGTCATCGTCAAAGGCTACGAGATTTCCCGACCGACCAGATTTTGGAAGAATGGGGAGAAGAGTTCAAGTCCGTGCAAATCACTTCCTGGTTGATGTGGCTGATAGGGATCTTCACCACTACGATGTATCCATTACTCCGGAAATCACATCAAAAAAAATCAACAGAGATGTGATGAATCAACTGGTTCAGATGTACGGAGGGTCACATTTGAACAAGAGAATACCAGCTTTTGATGGCCGGAAGAGTCTTTTCACAGCAGGTCCTTTGCCCTTTGTGTCAAAGGAATTTGTTGTCAAGTTGGTAGCCAAAGATGAAGAAGGCAGTTCTTCTAGTTCAACGAGGAACAAACGTGACCGCGAGTTTAAGGTTACCATTCGTTATGCTTCCAAGGCTGATCTCCATCATTTGCAGCAGTTTCTAAGAAGTCGACAGCTGGACAATCCTCAAGAAACAATTCAAGCACTTGATGTTGTCCTGAGGGCATCACCGTCTGAAAAGTATACTGTTGTTGGAAGATCTTTTTTCTCACCAAGTTTGGGTCAAAGTGGTGAGCTGGGTGGTGGAATAGAATATTGGAGAGGATATTATCAAAGTCTTCGCCCGACCCAGATGGGACTTTCCCTTAATATTGATGTATCAGCAAGGGCATTTTATGAAAACATCTTTGTGACTGATTTTATTGCAAAGCACTTTAATTTTAATTTTTCGAGGCGTCTGTCTGATCAAGACAGAATTAAGGTGAAAAGAGCTTTGAGAAGAGTAAAGGTTGAATTTACTAATGGTCAAATTACTAGAAGTTACATGATTACTGGTATCTCAAAGGAGCCACTGAGTGAGTTGATGTTCACTCTTGATGACAAGAAAACGAAAATAACTGTTGTTCGATATTTTCACGAGAAGTACAATGTTGAGCTAAAGTATTTGTCTCTTCCTGCCCTCCAAGCCGGGAATGATGCAAAACCCATTTATTTGCCTATGGAGCTTTGCAAGATAGCTGCTGGGCAAAGGTACTCAAAGAAACTGAATGAGAGGCAAGTTACTGCTCTTTTGAGAGCAACCTGTCAACGACCTCTTGACAGGGAGAACGACATCAGAGGGATGGCCAGACGTAACAATTTTAACAGAGACAAGCTCGTGCAAGAATTTGGAATTAAAGTGAGTGAAGAACTGGCATTGTGTGATGCACGTGTTTTGCCTCCTCCAAGGCTTAAATATCATGAAACTGGGAAGGAAGCAATTGTTGAACCCTCGAGGGGTCAGTGGAACATGATAAACAAGAAAATGTATAATGCTGGAAATGTGCAATATTGGACTTGTCTCAACTTTTCTACACGAGTGAATAGAGATTTGCCGCATCAATTCTGTAATGAGTTGATTAGTATGTGCACCAGTAAGGGATTGGTTTTCAGTCGAAACCCTTTACTTCCAATAAGGTCAGCTCATCCTAGTCAAATAGAGGGAGTTCTTAGAGAAGTTTACAAGCAAGCTGGGGAAAAGAAACTTCAGCTGTTGATTATAATCTTGCCCGACTTGAAAGGTTCTTATGCAAAGATTAAACGCATCTGTGAAACAGAATTAGGAATAGTGTCTCAATGCTCTCAGCCCAAGGAAGCTGAAAAGCTACAGAAGCAATATCTTGAAAATTTGGCCCTCAAGATCAATGTTAAGGTTGGGGGGCGCAATACAGTTTTGATGGATGCTCTCCAGAGGAGAATTCCTCATGTGACTGATCGCCCTACCATAATATTTGGTGCGGACGTAACACACCCTCAGCCAGGGGAGGACTCGAGCCCTTCGATAGCAGCGGTAGTAGCTTCCATGGATTGGCCAGAGGTCACTAAGTATCGTGGAATTGTTTCTGCCCAGGCACACAGAGAAGAGATTATACTAGATCTCTACAAACAGGATCTTGATAAGGGGGTTGTACATGGTGGAATGATCAGGGAGCTACTTATGGCATTTTATAAATCAACTAGATATAAGCCAGATAGGATTATATTCTACAGGGATGGAGTTAGTGAAGGCCAATTCAGTCAGGTTTTACTCCATGAAATTCAAGCCATAAGAAAGGCTTGTGCCTCATTACAGGAAGGATATCAGCCAAGAGTAACCTTCTTGGTGGTACAAAAAAGACATCACACTCGATTCTTTCCTGTTAATCATAACAGTCGTGATCAGACGGATAGAAGTGGAAATATTTTGCCAGGCACTGTTGTCGATACTCATATTTGCCATCCAAGAGAGTTTGATTTTTACCTCAACAGCCATGCTGGCATTAAGGGAACTAGCCGACCTACGCACTATCATGTTCTATTTGATGAGAACTACTTCAAAGCCGATGAGTTGCAGACTTTAACCAATAACCTGTGTTACACGTATGCAAGGTGCACTAAGTCAGTGTCAATAGTTCCTCCTGCATACTATGCCCATTTGGCTGCCTTCCGTGCTCGCTACTATATTGAAGGTGAGACATCAGATGTGGATTCTGGGAGTGGAAGTAGGAGCACTAATGTAGTTGTAACTCTTCCGGCAGTCATGGACAATGTCAAGGATGTAATGTTTTACTGCTAA 2733 0.4365 MPRRGGKQPQHQPSPAPSQPARGPDVAPARPQGAAPSAAPTDELGQLTLQSPAPSSSKATRFPDRPDFGRMGRRVQVRANHFLVDVADRDLHHYDVSITPEITSKKINRDVMNQLVQMYGGSHLNKRIPAFDGRKSLFTAGPLPFVSKEFVVKLVAKDEEGSSSSSTRNKRDREFKVTIRYASKADLHHLQQFLRSRQLDNPQETIQALDVVLRASPSEKYTVVGRSFFSPSLGQSGELGGGIEYWRGYYQSLRPTQMGLSLNIDVSARAFYENIFVTDFIAKHFNFNFSRRLSDQDRIKVKRALRRVKVEFTNGQITRSYMITGISKEPLSELMFTLDDKKTKITVVRYFHEKYNVELKYLSLPALQAGNDAKPIYLPMELCKIAAGQRYSKKLNERQVTALLRATCQRPLDRENDIRGMARRNNFNRDKLVQEFGIKVSEELALCDARVLPPPRLKYHETGKEAIVEPSRGQWNMINKKMYNAGNVQYWTCLNFSTRVNRDLPHQFCNELISMCTSKGLVFSRNPLLPIRSAHPSQIEGVLREVYKQAGEKKLQLLIIILPDLKGSYAKIKRICETELGIVSQCSQPKEAEKLQKQYLENLALKINVKVGGRNTVLMDALQRRIPHVTDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIILDLYKQDLDKGVVHGGMIRELLMAFYKSTRYKPDRIIFYRDGVSEGQFSQVLLHEIQAIRKACASLQEGYQPRVTFLVVQKRHHTRFFPVNHNSRDQTDRSGNILPGTVVDTHICHPREFDFYLNSHAGIKGTSRPTHYHVLFDENYFKADELQTLTNNLCYTYARCTKSVSIVPPAYYAHLAAFRARYYIEGETSDVDSGSGSRSTNVVVTLPAVMDNVKDVMFYC 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03396 910 CDD PAZ_argonaute_like 277 386 - -
Accr1g03396 910 MobiDBLite consensus disorder prediction 43 58 - -
Accr1g03396 910 Pfam Piwi domain 559 874 IPR003165 GO:0003676
Accr1g03396 910 Pfam Argonaute linker 2 domain 413 459 IPR032472 -
Accr1g03396 910 FunFam Argonaute 10 451 619 - -
Accr1g03396 910 SUPERFAMILY PAZ domain 75 428 IPR036085 GO:0005515
Accr1g03396 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 876 - -
Accr1g03396 910 Pfam Argonaute linker 1 domain 224 273 IPR014811 -
Accr1g03396 910 Pfam Mid domain of argonaute 470 548 IPR032473 -
Accr1g03396 910 MobiDBLite consensus disorder prediction 1 71 - -
Accr1g03396 910 SMART PAZ_2_a_3 279 407 IPR003100 GO:0005515
Accr1g03396 910 SMART Piwi_a_2 557 875 IPR003165 GO:0003676
Accr1g03396 910 CDD Piwi_ago-like 433 874 IPR045246 -
Accr1g03396 910 ProSiteProfiles PAZ domain profile. 275 387 IPR003100 GO:0005515
Accr1g03396 910 FunFam protein argonaute 10-like 625 910 - -
Accr1g03396 910 Gene3D - 451 619 - -
Accr1g03396 910 SMART DUF1785_2 222 274 IPR014811 -
Accr1g03396 910 Pfam PAZ domain 298 403 IPR003100 GO:0005515
Accr1g03396 910 Gene3D - 625 910 IPR036397 GO:0003676
Accr1g03396 910 Pfam N-terminal domain of argonaute 73 213 IPR032474 -
Accr1g03396 910 Gene3D paz domain 269 391 - -
Accr1g03396 910 ProSiteProfiles Piwi domain profile. 557 875 IPR003165 GO:0003676
Accr1g03396 910 SUPERFAMILY Ribonuclease H-like 544 875 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03396 Accr-Chr1 70458054 70463225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03396 52 910 Eukaryotic Initiation Factors Gene Family AT1G48410 60.992 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03396 K11593 - qsa:O6P43_028455 1307.74