Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03394 ATGGCGGAGGACCGCAACGGCGATAAGAATGAAAACAGTGACTATAGTTCAGAGGATGAAGGAACTGAGGATTACAGGCGAGGAGGTTACCATGCCGTTCGAATTGGCGATACTTTCAATAATGGGTGCTATGTGGTGCAGGCCAAGCTTGGTTGGGGTCATTTTTCTACTGTCTGGCTTGCTTGGGACGTCCAGAGATCGCGTTATGTGGCCTTAAAAATTCAAAAGAGTGCTCAGCACTATACTGAAGCTGCCATGGACGAAATAAAGATTCTTAAACAGATTGCAGAAGGGGACCCAGATGATAAGAAATGTGTAGTAAAGCTATTGGATCACTTCAAGCATTCTGGTCCTAATGGTCAGCATGTATGTATGGCGTTTGAATTTCTGGGTGACAATCTTCTGACACTTATCAAGTATAGTGATTACAGAGGGATTCCTCTCCCTATGGTCAAAGAAATTTGTTACCATATTTTGGTGGGCTTGGATTACCTTCATCGAGAGCTTTCCATAATACATACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCGTCTAAGGATCACAGAAAGTCAGGTGCCCAGCTCATCCTTCCTAGCACCAAGGGCAATCTTGTATCCAAGAATGAGGTCACAAAAGATAATGCTAGTTCGAATGGAAATCTGATCAGAAACCCAAAAAAGAAAATGCATAGAACGGCTAAGGTTGAGCATGAAATTATTGAGGAGGCTGAGGCTTCTAATGCCCATGATAAAGAAGATTCTAGCGATGATCTAAAATCAAATGTTGAATCTGTTGAAGATAAACCCAGTAGTTCGGTGAGTAAAGATGAACCAACAAAGACTGTCGAAACTAAGGATGTTCCACAAGGAAGTCAGAGTCAGAGGAAAGGTAGCCGTTCCATGAGAAAAAAGTTGCTTGCAGCTATTGATCTAAAGTGCAAACTGGTTGATTTTGGAAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAAACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATACTCAACTCCAGCGGATTTATGGTCTTTTGCTTGCATTTGCTTTGAGCTGGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATCGCACTAGGTGGCAGCTATTCCCGGGAATTTTTCAATAGATATGGTGATCTAAGGCACATTCGTCGGTTGCGGTTCTGGCCTCTTAATAAGGTGCTTATGGAGAAGTATAATTTCAGCGAGCAAGACGCAAAAGACTTGACAAACTTCCTTGTTCCTATACTTGATTTTGTCCCCGAAAATAGGCCAACAGCTGCTCAGTGTCTTAGTCATGCCTGGTTCAGTGCTGGTCCTCGGATTCTTCAGCCCTCTACAACTAGTGTGCAACGTGAGGCCACTAAGGGGGGAATGTCTGAAGAAACAAAGCGGGATAAGGCTCAGCAGGAAGCTGTGGAAGTTGGTGTGGGCAATATAGCTATTGGTGGAACTCCAAAGCCACTCAAAAAGTCTCAATCTGTTAGGTGA 1617 0.4317 MAEDRNGDKNENSDYSSEDEGTEDYRRGGYHAVRIGDTFNNGCYVVQAKLGWGHFSTVWLAWDVQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMAFEFLGDNLLTLIKYSDYRGIPLPMVKEICYHILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDHRKSGAQLILPSTKGNLVSKNEVTKDNASSNGNLIRNPKKKMHRTAKVEHEIIEEAEASNAHDKEDSSDDLKSNVESVEDKPSSSVSKDEPTKTVETKDVPQGSQSQRKGSRSMRKKLLAAIDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGSYSREFFNRYGDLRHIRRLRFWPLNKVLMEKYNFSEQDAKDLTNFLVPILDFVPENRPTAAQCLSHAWFSAGPRILQPSTTSVQREATKGGMSEETKRDKAQQEAVEVGVGNIAIGGTPKPLKKSQSVR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03394 538 MobiDBLite consensus disorder prediction 236 288 - -
Accr1g03394 538 MobiDBLite consensus disorder prediction 488 512 - -
Accr1g03394 538 CDD STKc_SRPK 33 478 - -
Accr1g03394 538 MobiDBLite consensus disorder prediction 201 228 - -
Accr1g03394 538 SUPERFAMILY Protein kinase-like (PK-like) 39 487 IPR011009 -
Accr1g03394 538 Coils Coil 253 273 - -
Accr1g03394 538 MobiDBLite consensus disorder prediction 1 23 - -
Accr1g03394 538 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03394 538 Pfam Protein kinase domain 315 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03394 538 FunFam CMGC/SRPK protein kinase 30 129 - -
Accr1g03394 538 SMART serkin_6 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03394 538 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Accr1g03394 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Accr1g03394 538 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Accr1g03394 538 ProSiteProfiles Protein kinase domain profile. 44 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03394 538 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 501 - -
Accr1g03394 538 FunFam Serine/threonine-protein kinase SRPK-like protein 308 478 - -
Accr1g03394 538 MobiDBLite consensus disorder prediction 201 304 - -
Accr1g03394 538 Gene3D Transferase(Phosphotransferase) domain 1 127 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03394 Accr-Chr1 70431559 70434030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03394 1 529 EF-hand Containing Proteins AT5G22840 65.794 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Accr1g03394 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03394 K08832 - gmx:100791829 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03394 1 70431559 70434030 Accr13g00395 13 3938477 3941958 CCT
Accr1g03394 1 70431559 70434030 Accr1g03394 1 70431559 70434030 ECH