Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03359 ATGGATTTGAGGGAATATTACAAGAGTGAAGAAGACAATAGTATGAACTTTGAAGCTCCAACTTTCTTTGAATGGCTCAAACCTACTCCTTCATCTTCTGAAATTCATGATCATCATCAAGAGGCTATTCAGTTTTTGCCAATTGTAACTGAAAAGCCGTCAATTGAACATAGTACTGTTGGAGCAATTAAACAAGAGAAGAAGGACAACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAATTACACACAAGGTTTTGAGGCTGATGGTGATCAGAAGAATAATAAGAAAGATTCTGATTTGAAGGAGGAAGAAGAAGAAGAAGTGGTGAATAAGAGAAACTTTCAAGGGTTCTCAAAGAATTCTAACACAGAGAGAAGATTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGAGCAGAATCGCTGAGAGGAACACAACCAGCAGCAATGTTGAGGCTGCCATGTTATTGTTGTGCACAAGGCTGCAAGAACAATATCAACCATCCAAGAGGGAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGTGACAAAACCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGGTCTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTCTTTCTCATCAACATCATCATGATGATGGCCACAAGCAATATGATTCCATCACTAGTACCACTGCCTCTCAAGAATCTTAA 933 0.4126 MDLREYYKSEEDNSMNFEAPTFFEWLKPTPSSSEIHDHHQEAIQFLPIVTEKPSIEHSTVGAIKQEKKDNVDEQVTVALHIGLPNYTQGFEADGDQKNNKKDSDLKEEEEEEVVNKRNFQGFSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLRGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCDKTFAVKGDWRTHEKNCGKVWYCTCGSDFKHKRSLKDHIRSFGKGHSPLSHQHHHDDGHKQYDSITSTTASQES 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03359 310 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Accr1g03359 310 Gene3D Classic Zinc Finger 146 169 - -
Accr1g03359 310 MobiDBLite consensus disorder prediction 88 121 - -
Accr1g03359 310 Gene3D Classic Zinc Finger 189 280 - -
Accr1g03359 310 SUPERFAMILY beta-beta-alpha zinc fingers 216 251 IPR036236 -
Accr1g03359 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Accr1g03359 310 FunFam Zinc finger protein WIP2 200 282 - -
Accr1g03359 310 PANTHER ZINC FINGER PROTEIN WIP2 31 300 IPR043584 GO:0003700|GO:0010468
Accr1g03359 310 Pfam C2H2-type zinc finger 147 166 - -
Accr1g03359 310 SMART c2h2final6 231 251 IPR013087 -
Accr1g03359 310 SMART c2h2final6 147 169 IPR013087 -
Accr1g03359 310 SMART c2h2final6 194 226 IPR013087 -
Accr1g03359 310 MobiDBLite consensus disorder prediction 94 117 - -
Accr1g03359 310 SUPERFAMILY beta-beta-alpha zinc fingers 139 170 IPR036236 -
Accr1g03359 310 MobiDBLite consensus disorder prediction 276 310 - -
Accr1g03359 310 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03359 Accr-Chr1 70024668 70026620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03359 9 284 C2H2 Transcription Factor Family AT1G08290 56.832 2.62e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr1g03359 zf-C2H2_6 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03359 - - gmx:100788451 399.823