Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03349 ATGCCACGAGGAAAGGAAAATTCTTCATCAGTTGATAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATTTTGATGAAGAAAATGATCCTGAGGAAACAATGGAAGAAGAAAGTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTTGAAGAGATAGAAGTTGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGAAGAAGAAGAAGATGATGATGATGATGCTGATCATGTCAATGACACTGATGCCATGCAAAACATTAGCAGTGATGAGGCAAAGGTGGAAGACGAGGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGTGAAGTTACAGAGGTGAGGGTTATGAAAGGAAAAGATTCTGCAGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCATCTAAAGCCATTGAAGAGCTACATAATAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCGTCCCAAGCTAAGCACCGACTTTTCATTGGCAATGTTCCGAGAAGCTGGGGAGATGAGGATCTGAGGAAGGTTGTAAGTGAGATTGGACCAGGAGTTACAACTGTGGAACTAGTCAAGGACATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATCCAAAATTCAAGCTGGGTGACAATGCTCCAACAGTTAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAGGGCAGTATATGTTAAGAACTTACCTAAGGATGTAACTGGAGATGAACTAAAGAAACTTTTTGAGCACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAAGGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCCCAGGTTGATAAGTCTGGAGGGTCAAATACACAGAAGTCAGGATTGCTTCCTAGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGCCTAGGCGCTGGATATGCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGGCCATGATGCCCATGCTTTTGCCTGA 1296 0.4252 MPRGKENSSSVDKPSEPEKPTESDEKVDFDEENDPEETMEEESEYEEVEEEEEVEEIEVEEEEEEEEEEVEEEEDDDDDADHVNDTDAMQNISSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELHNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVSEIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDPKFKLGDNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELKKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELKGQVLECSLAKPQVDKSGGSNTQKSGLLPSYPPHVGYNLIGGAYGGLGAGYAHDTWKGSSSIWNGHDAHAFA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03349 431 MobiDBLite consensus disorder prediction 1 106 - -
Accr1g03349 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Accr1g03349 431 Gene3D - 3 199 IPR012677 -
Accr1g03349 431 Gene3D - 281 386 IPR012677 -
Accr1g03349 431 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Accr1g03349 431 Gene3D - 200 280 IPR012677 -
Accr1g03349 431 MobiDBLite consensus disorder prediction 27 83 - -
Accr1g03349 431 FunFam RNA recognition motif-containing protein 21 199 - -
Accr1g03349 431 SMART rrm1_1 294 367 IPR000504 GO:0003723
Accr1g03349 431 SMART rrm1_1 120 193 IPR000504 GO:0003723
Accr1g03349 431 SMART rrm1_1 200 277 IPR000504 GO:0003723
Accr1g03349 431 CDD RRM_SF 121 193 - -
Accr1g03349 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Accr1g03349 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Accr1g03349 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 262 IPR000504 GO:0003723
Accr1g03349 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Accr1g03349 431 Coils Coil 38 77 - -
Accr1g03349 431 MobiDBLite consensus disorder prediction 9 26 - -
Accr1g03349 431 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 379 - -
Accr1g03349 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Accr1g03349 431 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
Accr1g03349 431 SUPERFAMILY RNA-binding domain, RBD 116 371 IPR035979 GO:0003676
Accr1g03349 431 SMART rrm2_1 294 367 IPR003954 GO:0003676
Accr1g03349 431 SMART rrm2_1 120 193 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03349 Accr-Chr1 69903792 69906284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03349 119 375 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 8.34e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03349 K13161 - qsa:O6P43_000471 559.296