Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03348 ATGCCACGAGGAAAGGAAAATTCTTCATCAGTTGATAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATTTTGATGAAGAAAATGATCCTGAGGAAACAATGGAAGAAGAAAGTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTTGAAGAGATAGAAGTTGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGTTGAAGAAGAAGAAGATGATGATGATGATGCTGATCATGTCAATGACACTGATGCCATGCAAAACATTAGCAGTGATGAGGCAAAGGTGGAAGACGAGGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGTGAAGTTACAGAGGTGAGGGTTATGAAAGGAAAAGATTCTGCAGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCATCTAAAGCCATTGAAGAGCTACATAATAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCGTCCCAAGCTAAGCACCGACTTTTCATTGGCAATGTTCCGAGAAGCTGGGGAGATGAGGATCTGAGGAAGGTTGTAAGTGAGATTGGACCAGGAGTTACAACTGTGGAACTAGTCAAGGACATGAAGCACCCAACAAACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATCCAAAATTCAAGCTGGGTGACAATGCTCCAACAGTTAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAGGGCAGTATATGTTAAGAACTTACCTAAGGATGTAACTGGAGATGAACTAAAGAAACTTTTTGAGCACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAAGGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCCCAGGTTGATAAGTCTGGAGGGTCAAATACACAGAAGTCAGGATTGCTTCCTAGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGCCTAGGCGCTGGATATGGTACTGCAGGCCTTGCACATGTGGCACATCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGGCCATGATGCCCATGCTTTTGCCTGACGGGCGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCATCTTCACATCATAGAGGCGGCAGGAATGGAGGGAGTGGCAGCAGGAACTTTGGCAGTTCAAGCAAGGGAAGGAACAACAATGCTAGTGGCCAAGGGCGCAGATACCGTCCATATTAG 1494 0.4398 MPRGKENSSSVDKPSEPEKPTESDEKVDFDEENDPEETMEEESEYEEVEEEEEVEEIEVEEEEEEEEEEVEEEEDDDDDADHVNDTDAMQNISSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASGEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELHNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVSEIGPGVTTVELVKDMKHPTNNRGFAFVNYYNHACAEYSRKKMMDPKFKLGDNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELKKLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELKGQVLECSLAKPQVDKSGGSNTQKSGLLPSYPPHVGYNLIGGAYGGLGAGYGTAGLAHVAHPMIHGRGPAPSGMAMMPMLLPDGRIGYVLQQPGMQPQTPSSHHRGGRNGGSGSRNFGSSSKGRNNNASGQGRRYRPY 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03348 497 MobiDBLite consensus disorder prediction 1 106 - -
Accr1g03348 497 Gene3D - 281 386 IPR012677 -
Accr1g03348 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 281 IPR000504 GO:0003723
Accr1g03348 497 MobiDBLite consensus disorder prediction 451 491 - -
Accr1g03348 497 MobiDBLite consensus disorder prediction 27 83 - -
Accr1g03348 497 Gene3D - 200 280 IPR012677 -
Accr1g03348 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 191 IPR000504 GO:0003723
Accr1g03348 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 262 IPR000504 GO:0003723
Accr1g03348 497 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 364 IPR000504 GO:0003723
Accr1g03348 497 SMART rrm1_1 294 367 IPR000504 GO:0003723
Accr1g03348 497 SMART rrm1_1 200 277 IPR000504 GO:0003723
Accr1g03348 497 SMART rrm1_1 120 193 IPR000504 GO:0003723
Accr1g03348 497 CDD RRM_SF 121 193 - -
Accr1g03348 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Accr1g03348 497 MobiDBLite consensus disorder prediction 449 497 - -
Accr1g03348 497 SUPERFAMILY RNA-binding domain, RBD 200 284 IPR035979 GO:0003676
Accr1g03348 497 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 200 280 - -
Accr1g03348 497 Coils Coil 38 77 - -
Accr1g03348 497 MobiDBLite consensus disorder prediction 9 26 - -
Accr1g03348 497 FunFam RNA recognition motif-containing protein 21 199 - -
Accr1g03348 497 Gene3D - 83 199 IPR012677 -
Accr1g03348 497 SUPERFAMILY RNA-binding domain, RBD 116 371 IPR035979 GO:0003676
Accr1g03348 497 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Accr1g03348 497 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 484 - -
Accr1g03348 497 SMART rrm2_1 294 367 IPR003954 GO:0003676
Accr1g03348 497 SMART rrm2_1 120 193 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03348 Accr-Chr1 69903792 69906649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03348 119 375 Eukaryotic Initiation Factors Gene Family AT1G71770 26.667 1.10e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03348 K13161 - qsa:O6P43_000471 627.476