Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03340 ATGGAACATCGTCCTCCTCCTGGTTTTCGCTTCTACCCAACAGAGGAAGAGCTAGTGGCTTTCTACCTCCACAACAAGCTTCAAGGTCCAAGTGACCACATCAACAGAGTCATCCCTGACGTTGGCATTTATGACTTTGAGCCCTCCGAGCTTCCCAAGATGGCGGGAGAGATGTGTCGCGGAGACACAGAGCAATGGTTCTTCTTCTCGCCGAGACAAGAGAGAGAAACCAGAGGAGGAAAGCCCAACCGAAGCACGGCTTGTGGGTATTGGAAAGCCACGGGTTCTCCAGGCCACGTTTACTCTTCTGATAACAGAGTCATTGGGTTGAAGAAGACCATGGTTTATTACAGAGGCAAAGCTCCTTGCGGAAGAAAAACCAAGTGGAAGATGAACGAATACAGAGCTATTGAATTCTCTCACCAATCCTCCGTCGCCACTCCTAAGTTGAGGAACGAATTTAGCTTGTGCCGGGTTTACGTGATATCGGGAAGCTTTCGAGCATTTGATCGCCGCCCTTTAGCTTTTTCAACAAGTGGGCACGATCAGAGTACGAGGTTGCATGAATCGAGCTCACTTGGAACCTCAAACACAGACCCAGATGGCGGGGGATCGAGTCGTGTAAATAACGAGGAACAAGAACAACATCTGTGGGACTGGGACCACTTTACTTGCGATGCTTCTTTTAATTATGACTCAAATCCTTGA 708 0.4873 MEHRPPPGFRFYPTEEELVAFYLHNKLQGPSDHINRVIPDVGIYDFEPSELPKMAGEMCRGDTEQWFFFSPRQERETRGGKPNRSTACGYWKATGSPGHVYSSDNRVIGLKKTMVYYRGKAPCGRKTKWKMNEYRAIEFSHQSSVATPKLRNEFSLCRVYVISGSFRAFDRRPLAFSTSGHDQSTRLHESSSLGTSNTDPDGGGSSRVNNEEQEQHLWDWDHFTCDASFNYDSNP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03340 235 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 183 - -
Accr1g03340 235 MobiDBLite consensus disorder prediction 178 211 - -
Accr1g03340 235 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Accr1g03340 235 Gene3D NAC domain 14 165 IPR036093 GO:0003677|GO:0006355
Accr1g03340 235 ProSiteProfiles NAC domain profile. 5 162 IPR003441 GO:0003677|GO:0006355
Accr1g03340 235 Pfam No apical meristem (NAM) protein 6 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03340 Accr-Chr1 69864411 69865346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03340 8 224 NAC Transcription Factor Family AT5G22380 54.783 4.78e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g03340 NAM 6.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03340 - - gmx:100780264 297.36