Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03312 ATGGCAGAAAGTGAAGTTCCTCAATATTTCTTATGTCCTATTTCTCTTGAGATCATGAAAGATCCTGTGACGACTGTAGCAGGTATAACCTACGACAGAGACAGCATCGAGCAGTGGTTGCTCACCGCGACGGAGAGGAAATGCCCTGTCACCAAGCAGCCATTGCCTCCTAACTCAGCCTTGACCCCGAACACTACCTTACTCAGGCTAATCCAGGCCTGGTCCTCACAGAATAATGCTCAAAACGGCGTCGTTCGTGTCCCATCCCCGAAATCCCTCCTCACCTCCATCCACGTTCACAAGCTTATTTCTGATCTTCGGAATCCTCATCTGTATCAAACGACATTGTTAAAAATGGATGCTTTGGCCACACACAGCGAAATCAACAGAAGGTGCATGGTGGAATCTGGAGCACTCGAGCCTATGGTTTCCATAATTACTCAGAGTTTCAAAGAAGGTATAACAAATTGCCTGGAAGGAGCTTTGAGAATTTTTCGTTTACTCTGGGCTATATCGTCATCCATGCCTCACATGAAGCCTCTGTTCTGTGAATACTTAGACTTTATCATCACCTCTTTGACCTCGGCTTTGCAAATTGACGTCACCAACCGCGTTTACATAGTAAACGAAGCAATGCCTTTTCTGAAGTCGACCATTGAAGCCGCAGATTCAGGCCTTCTGGGAAACTTAAAGGTTGAATTTTTCAGGGAAATAACAAGGGTGCTAAAAAACAGAACAGTCTCAGAGCAGGCCATAAAATCAGCCTTGCAGGTTCTCATAGAAACGTGCCCATTAGGAAGAAACCGAATGAAAATCGTAGAATCAGGAGCAGTCTTTGAATTAATCGATCTTGAGCTGGAAAAACCAACAAAGAAGATAACAGAACTGGTGTTCAACCTTCTGACGCATCTATGTTCGTGTGCTGATGGGAGAGAACAGTTTCTGCAACACGCAGCGGGAATCGCTGTGATATCTAAGAGGATTCTGAGGGTTTCGAATGCAACAGACGATCAAGCTCTTCATATATTATCGTCGATAGCTAGGTACTCGTCTTCGAACGATGTCGTTTTGGAGATGTTGAGGGTGGGAGCTGTGTCCAAACTTTGCATGGTGATGCAAGCTGACTGTGCTTCTTATTTGAAGGAGAAAGCAAGAAGTATCCTTAGGTTACACTCCAAAACTTGGAACAATTCTCCTTGCATTCAGGTATATTTGTTAACCAGGCACCAAAGGTGA 1236 0.4458 MAESEVPQYFLCPISLEIMKDPVTTVAGITYDRDSIEQWLLTATERKCPVTKQPLPPNSALTPNTTLLRLIQAWSSQNNAQNGVVRVPSPKSLLTSIHVHKLISDLRNPHLYQTTLLKMDALATHSEINRRCMVESGALEPMVSIITQSFKEGITNCLEGALRIFRLLWAISSSMPHMKPLFCEYLDFIITSLTSALQIDVTNRVYIVNEAMPFLKSTIEAADSGLLGNLKVEFFREITRVLKNRTVSEQAIKSALQVLIETCPLGRNRMKIVESGAVFELIDLELEKPTKKITELVFNLLTHLCSCADGREQFLQHAAGIAVISKRILRVSNATDDQALHILSSIARYSSSNDVVLEMLRVGAVSKLCMVMQADCASYLKEKARSILRLHSKTWNNSPCIQVYLLTRHQR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03312 411 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Accr1g03312 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Accr1g03312 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Accr1g03312 411 SUPERFAMILY RING/U-box 4 80 - -
Accr1g03312 411 Gene3D - 99 398 IPR011989 -
Accr1g03312 411 SUPERFAMILY ARM repeat 103 388 IPR016024 -
Accr1g03312 411 CDD RING-Ubox_WDSUB1-like 7 64 - -
Accr1g03312 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Accr1g03312 411 PANTHER WDSAM1 PROTEIN 4 402 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03312 Accr-Chr1 69653407 69654642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03312 3 401 U-box Gene Family AT2G35930 39.356 1.95e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03312 - - gmx:100778547 510.375