Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03311 ATGGAAGAAATCGACGTTCCTTCTCATTTTCTCTGCCCCATTTCCCTGCAGCTCATGAGGGACCCCGTCACGGTACGTACCGGAATCACTTACGATCGAGAAAACATTGAAACGTGGCTGTTTTCGTGCAAGGACAGAACATGCCCTGTCACGAAGCAATTCATTTTCGATACAGATCTCACCCCAAACCACACGCTTCGACGTCTCATCCAGGCTTGGTGCAACCTGAATGCATCCTTTGGCATCGAGCGAATTCCCACTCCCAAACCACCCGTCAACAAAATCCAGATCGCCAGACTCCTCTCCGAAGCAAACCAATCCCCACAAAACCATCTCAAATGCCTCACAAGGCTCCGATCCATTGCTTTCGAAAGCGACGGGAACAAGATTTATTTGGAATCTGCAGGGGCAATAGAGTTCTTGGCCTCAGCCTTAAAGTTAAGCAGTGGCAGAGACACCCAAGTCGACGACGACGACGAATGTACAACCGACGACGACGAATGTACAACCGTTATGAGCAGTGAAGAAGCAGCGCTAGAGGTTCTGTACCATCTAAAACCTTCAGAGTCTCACATTAAGAGCCTAATCAGCAACGAGGGAATTAAATTCATCGAGTCCTTGATCCAAATCCTGAGGAGCGGGAACTACCAATCCCGAGCCTATGCGACAATATTACTAAAATCAGCGTTCGGAGTGGCAGATCCAAGCCAATTGATCAATGTGAGAACAGAATTGTTGGCGGAACTCACGAGAGTGTTGCGAGACAAGATTTCGCAGCAAGCCACAAAGGCGGCGTTGAAGCTGGTGGTGGAGCTGTGTCCATGGGGGAAGAACAGAATAAAAGCGGCGGAAAGCGGAGTGGCAGAGGTGCTGATAGAGATGCTTCTAGAAGCTTGGGAGAGAAGAGTTTGTGAACTGATTCTGATAGCGTTGGATCAACTGTGTGGGTGCGCGGAAGGAAGAGCAGAGGTAGTGAAGCACGGCGCAGGAATGGCGATAGTGTCGAAGAAGATTCTGAGGGTATCACACGTGGCAACGGACAGAGGGGTGAAGATATTGAGCTCAATAGGTCGGTATTCGGGGAATGCGAGGGTTATTCATGAAATGTTGCAGGTGGGAGCGGTGTGTAAGCTGTGTCTGGTGCTTCAGGTGGAGGCGAGCTTGAAGACGAAGGAGAGGGCCAAGGAGCTTCTCAAATTGCACTCCAACGTTTGGAGCATTTCCCCCTGTATTCCCCCTCCTCTCCTCCAATCCTATCCTTCCTCTAATTGA 1272 0.5 MEEIDVPSHFLCPISLQLMRDPVTVRTGITYDRENIETWLFSCKDRTCPVTKQFIFDTDLTPNHTLRRLIQAWCNLNASFGIERIPTPKPPVNKIQIARLLSEANQSPQNHLKCLTRLRSIAFESDGNKIYLESAGAIEFLASALKLSSGRDTQVDDDDECTTDDDECTTVMSSEEAALEVLYHLKPSESHIKSLISNEGIKFIESLIQILRSGNYQSRAYATILLKSAFGVADPSQLINVRTELLAELTRVLRDKISQQATKAALKLVVELCPWGKNRIKAAESGVAEVLIEMLLEAWERRVCELILIALDQLCGCAEGRAEVVKHGAGMAIVSKKILRVSHVATDRGVKILSSIGRYSGNARVIHEMLQVGAVCKLCLVLQVEASLKTKERAKELLKLHSNVWSISPCIPPPLLQSYPSSN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03311 423 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Accr1g03311 423 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Accr1g03311 423 CDD RING-Ubox_PUB 7 60 IPR045210 -
Accr1g03311 423 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Accr1g03311 423 PANTHER WDSAM1 PROTEIN 2 412 IPR045185 GO:0061630
Accr1g03311 423 Gene3D - 94 406 IPR011989 -
Accr1g03311 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Accr1g03311 423 SUPERFAMILY RING/U-box 3 77 - -
Accr1g03311 423 SUPERFAMILY ARM repeat 105 388 IPR016024 -
Accr1g03311 423 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03311 Accr-Chr1 69643810 69645081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03311 2 421 U-box Gene Family AT3G52450 51.501 5.51e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03311 - - gmx:100778012 570.081