Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03287 ATGAACTGGAGCAGAGGCAGCGTCTTAGGCCATGGCTCATCGGCCACCGTCTCCCTGGCTGCCTCTCCCCAGTGTGGCGAAGCCTTCTTCGCCGTCAAGTCATCGGAGCTTTCTTGCTCAGGATTGTTACAGAGAGAGCAGAGAATTCTCTCTTCTTTGTCTTCTCCTTATATAGTTAGCTATAAAGGGTGTGACATCACAAGGGAGGACAACAAGGTCTTGTACAATCTTTTCATGGAGTATATGCCTCTTGGCACGCTTAGTCAGGCAACTCGCCGGCAGGGTGGTCGCCTCGACGAGCCGTTGATTGCGTACTACATTAGGCAAGTTTTGCAGGGGCTGGAGTATCTACATTCAAATGGGTTGGTACATTGTGACATTAAGGGTGCCAATATCTTGATTGGAGAACATGGAGCCAAAATTGCAGACTTTGGATGTGCTAAGCGGGAGACGGCGGCGGCGCCGATAAGTGGGACGCCGTTGTTTATGGCACCAGAGGTGGCTCGTGGGGAAGAACAGGGGTATCCTTGTGACATATGGGCTCTTGGGTGCACTGTGATTGAAGTGTCTTCAGGGCTTTCACCATGGCCTAATGCAGGAGACCCTGTTTCGATTCTTTACCGGATAGCATATTCCGGCGAGGAGCCGGAGATTCCGGGTTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCGGAAGAGAGATGGACGGCAAGTCAACTACTGAAGCATCCATTTCTTGGGGAATTGAATTCCGATTCCAAGCAAATCCACGAATCTAATTCAAGTTCGCCAACAAGTATTCTGGAGCAAGGCTTTTGGAGTTCAATGGAAGAATCAGAGAGTGTAAGCAATCTAGGACTTAATCGTACAAGTTTCGAAAATTCGCCAGCTGTTAGAATCAGACAATTAGCTGTGAGTTCAGGGGAACCCAATTGGATAGAAGATGAGAATTGGATCACAACGATAGGGAATGAAGGATCAGTAATTGAAGCATCAATGAGCAATAATTTGGAAGAGTCGGAGAAAAGCAATGTTAGTAGTAGAATTAGTGATTGTTTTTGGGACGATTACCAAGGTAGGGATGTTAGTATTGTAACAAGTAGTATCATTTTTGAGAGAGGCATTGATAAGTTGCCACTCCATCCAGTATCAATTCTTTTATAA 1185 0.4633 MNWSRGSVLGHGSSATVSLAASPQCGEAFFAVKSSELSCSGLLQREQRILSSLSSPYIVSYKGCDITREDNKVLYNLFMEYMPLGTLSQATRRQGGRLDEPLIAYYIRQVLQGLEYLHSNGLVHCDIKGANILIGEHGAKIADFGCAKRETAAAPISGTPLFMAPEVARGEEQGYPCDIWALGCTVIEVSSGLSPWPNAGDPVSILYRIAYSGEEPEIPGFLSEEAKDFLGKCLRRNPEERWTASQLLKHPFLGELNSDSKQIHESNSSSPTSILEQGFWSSMEESESVSNLGLNRTSFENSPAVRIRQLAVSSGEPNWIEDENWITTIGNEGSVIEASMSNNLEESEKSNVSSRISDCFWDDYQGRDVSIVTSSIIFERGIDKLPLHPVSILL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03287 394 SUPERFAMILY Protein kinase-like (PK-like) 2 308 IPR011009 -
Accr1g03287 394 Gene3D Transferase(Phosphotransferase) domain 1 2 311 - -
Accr1g03287 394 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
Accr1g03287 394 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 288 - -
Accr1g03287 394 CDD STKc_MAPKKK 2 253 - -
Accr1g03287 394 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03287 394 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03287 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Accr1g03287 394 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03287 394 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03287 Accr-Chr1 69474072 69475256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03287 2 330 MAP Kinase Kinase Kinase AT5G55090 51.744 1.92e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Accr1g03287 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03287 K20716 - qsa:O6P43_028662 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03287 1 69474072 69475256 Accr13g00547 13 5788874 5790076 CCT
Accr1g03287 1 69474072 69475256 Accr1g03287 1 69474072 69475256 ECH