Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03241 ATGGACATCGACTCCTCACACACCTCCAATTGGCTCTGTGACTATGGCTTTGATGTCTCTGTCGCCGGTGCTGAATTCCCGGTCGTCCCTTCCCGCTGTTTCAACTGGGTTTCTCCTGCTTTCCACGGTTCTTCCGATACGAGCTTAGACCTGGAACACTCTCTGGACAATTCAACTTTCATGGAAAATGGCCCTTCAAAGCGGTTGAAGATTGAATCATGTGCATCAGGCTCCAAGGCATGCCGTGAGAAACTGCGGAGGGATAGATTGAATGAGAGGTTCCTGGAATTGAGTTCTATCTTGGAGCCTGGTAAGCTGCCTAAGACGGATAAGGCTGCTATATTAAGTGATGCAGTTCGAATGTTGACAGAACTGCGAAGTGAAGCCCAGAAGCTCAAGGAAACAAATGATGAACTGCTTGTAAAGATTAAGGAACTGAAGGCAGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGATGGACAGAGAAAAGCTGGAACAACAGGTGAAAGGGATGACTGCACAGCCGACCTATGTTTCTCACCCTTCTACTGCATTTACTGCTCAAGGCCAAACTGGCAGCCACAAGCTCATACCTTTTGTTGGCTATCCTGGAATCGGCATGTGGCAGTTTTTGCCACCTGCTACTGTTGATACGTCTCAGGATCATCTGCTTCGCCCTCCTGTCGCTTAA 699 0.4807 MDIDSSHTSNWLCDYGFDVSVAGAEFPVVPSRCFNWVSPAFHGSSDTSLDLEHSLDNSTFMENGPSKRLKIESCASGSKACREKLRRDRLNERFLELSSILEPGKLPKTDKAAILSDAVRMLTELRSEAQKLKETNDELLVKIKELKAEKNELRDEKNRLKMDREKLEQQVKGMTAQPTYVSHPSTAFTAQGQTGSHKLIPFVGYPGIGMWQFLPPATVDTSQDHLLRPPVA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03241 232 FunFam Transcription factor bHLH34 66 123 - -
Accr1g03241 232 CDD bHLH_AtILR3_like 79 154 - -
Accr1g03241 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Accr1g03241 232 SMART finulus 80 131 IPR011598 GO:0046983
Accr1g03241 232 Coils Coil 115 177 - -
Accr1g03241 232 Pfam Helix-loop-helix DNA-binding domain 78 125 IPR011598 GO:0046983
Accr1g03241 232 Gene3D - 71 123 IPR036638 GO:0046983
Accr1g03241 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 149 IPR036638 GO:0046983
Accr1g03241 232 PANTHER BHLH TRANSCRIPTION FACTOR 6 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Accr1g03241 232 Gene3D arf6 gtpase in complex with a specific effector, jip4 124 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03241 Accr-Chr1 69097963 69100946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03241 5 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 54.959 3.44e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g03241 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03241 - - gmx:100803143 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03241 1 69097963 69100946 Accr1g03241 1 69097963 69100946 ECH