Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03174 ATGGCCTTAGATTTGCACTATGAGGATTCTGCATTGCAAGTTGATGACTCTAGAGATAAATCTTGTTCTGAGAAGTGGAATTCTACCCCTGAAGCCATTGCAGATTGTGATAGGGATTCTTCTGGTGACTTTCAATGCAATATTTGTCTGGATTCCTTGCATGATCCTGTATTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATCTACAAATGGTTCCATTATAGTAATGCTTCTTCCCGAAACACAGATCAGGAGAGGACATTATGCCCAGTATGCAAATCAGAAATCTCTCAACCCTCTCTTGTTCCGGTATATGGACGCATCCGAACCACCACACCTTCCAAAGACAGTCCTTACAATGTAGGGAGTGCCATACCTCCAAGACCTCGTGGACCTGTGTTGGTTCACGACTTACCAAGATCATACAACAGCACAGTTGCAGCTCATGACTCTCGAAGATCATATGATACCACAATTGCTTCCCAACCAGCTACTCAACAGTTCAACGTATTTAACTCAACACATGGAGTTTTTGGTCAGATGATATACGAGAGGATCTTTGGTAACCACCTGACAAACATGTACGCTTCTAATTCATATGGTCTCTCTGGGAACAACAATCCGAGGGTGAGAAGGTATTTGATGCCAGTGGATAAATCACTCAGCAGAATCTGTTTTTTCTTCTTCTGCTGCACAGTTTTGTGCCTTCTCTTGTTCTGA 726 0.4311 MALDLHYEDSALQVDDSRDKSCSEKWNSTPEAIADCDRDSSGDFQCNICLDSLHDPVLTLCGHLYCWPCIYKWFHYSNASSRNTDQERTLCPVCKSEISQPSLVPVYGRIRTTTPSKDSPYNVGSAIPPRPRGPVLVHDLPRSYNSTVAAHDSRRSYDTTIASQPATQQFNVFNSTHGVFGQMIYERIFGNHLTNMYASNSYGLSGNNNPRVRRYLMPVDKSLSRICFFFFCCTVLCLLLF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03174 241 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Accr1g03174 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 114 IPR013083 -
Accr1g03174 241 SMART ring_2 46 94 IPR001841 -
Accr1g03174 241 SUPERFAMILY RING/U-box 41 107 - -
Accr1g03174 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr1g03174 241 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Accr1g03174 241 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03174 Accr-Chr1 68517855 68518580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03174 39 241 C3H Transcription Factor Family AT4G28270 40.385 4.78e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03174 K10666 - zju:107417302 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03174 1 68517855 68518580 Accr1g03174 1 68517855 68518580 ECH