Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03170 ATGGAGCCTTTGCTGAAAGGCGAAAGCAGTGCTCATAGGATGCGCTCGCCTGGGTTATTCCAGCGTCGCTCACATGCTATTGCTTACGGCTCGCCCTCCGTGAAAGCGGCTGCGCTTGTGGATCTGGCTGAAGATGGCGTCGGCATCCCAGAGCAAGTACTGGATTCGTCGGAATTTCAGAGTTCTGCTAGATTTTATTTTATATTCATTAAATTAAACTTGCTTTGGTCACTTGGTTACTTTGCCTTGCTAGTCCTGAATTTCCTTGAGAAACCCTTGTGGTGTGAAAAGTATGCCGCTTACTCTTGCGATGATAGAGAGTATTTCTTTCTGGGACAACTGCCATATCTAACTGGTACAGAATGTGTTATTTACGAGGGTATAACTCTTCTTGTGCTCATTGTGCATATTTTTTTCCCGATATCTTATGAGGGCTCCGGTATATATTGGAAAAAAACTGTTAATCAATTGAAGGTACTGTGTCTGTTAGTTCTGGTTGCTGATATGGTGGTTTATGCTCTGTATTTGTCTCCAGTGACTTTTTATTCTCTACCTGTCAGATTTGCACCTTATGTCAGGGTTGTTCTTTTCATTTTACATATTAGGGAATTACGAGCAACCATGACCATCTTGGCTGGAATGCTTAGCACATACCTGAATGTCCTGGCTTTGGGGCTTCTGTTTCTTCTTTTCTCAAGTTGGGTGGCGTATGTGATGTTTGAAGATACACAACAGGGGAAGATAGTATTCACTTCCTTTGGCACCACATTATATCAGATGCTTGTTTTATTCACCACATCCAATAATCCAGATGTTTGGATTCCTGCATACAAGGCTTCACGTTGGTATTGCCTGTTTTTTATTCTCTTTGTGCTGTTGGGGGTTTACTTTGTCACAAACTTGGTCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGCAAAACAAGTTTTTGAGATGGATCAAATGAGAAGAAATATGTTGGGGAAAGCATTTGATCTATTAGATAACAATCATGTTGGGTGTCTTGACAAAAACCAGTGCATTGAACTCTTTCAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCCGGGGAGAATTTGAGCTGATATTTGATGAGCTGGATGATAGTCGTGATGTCAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAGTTCCAGAAGGAGGATACCCCATCTTACTTTGAGTATTTTGCATTCTACCACACTCCCACCTCCAAGAAGTTGAAAGCATTTGTGCGGAGCCTGAAGTTTGGATACATAATATCCTTCATTCTTGTATTGAATCTGATCGCTGTTATAATTGAGACAACGCTTGATATACAAAATAATTCTGCTCAAAAGGTGTGGCAAGTGGTTGAGTTTATTTTTGGATGGATATATGTAATAGAAATGGCTTTAAAAGTGTATTCATATGGATTCGAGAATTATTGGCGGGATGGTCAGAATCAATTTGACTTTATCATCACCTGGGTAATTGTCATTGGAGAAACTGTAACTTTTCTTACACCTGATGACCCGGATCTTTTCTCAAATGGAGAATGGATTCGCTACCTTCTTCTTGCAAGAATGTTGAGGTTGATAAGGCTCCTAATGCATGTCCAGCAATACCGAGCCTTTGTGGCAACCTTCCTAACCCTCATACCAAGTTTGATGCCATACCTTGGAACCATATTTTGTGTCTTGTGTGTTTATTGCTCCCTTGGTGTACAGATCTTTGGCGGAATTGTCAATGCTGGAAATCCCAAATTGGATGCAACAGATCTTGCTGACAATGACTATCTGCTCTTTAATTTTAATGATTATCCAAATGGAATGGTTACACTTTTCAATTTGGTAGTCATGGGAAACTGGCAAGCATGGATGCAGAGCTACAAGGAATTAACGGGGACTTCTTGGACCTATATTTACTTTATTAGCTTCTACTTAATAACTGTTCTGCTACTTTTGAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGCTTGAGACGTCTGCTGATTGTAGAGAAGAGGATGACAAGGAAGCTGAAGGAGAGAGACATCGAAGACGACGTGTTGGCACCAAAACACGGAGCCAAAGGGTTGATGCTCTTCTTCATCATATGTTGAGCTCCGAGTTATGTCAAGCACAGCCTTCCGATCCATAA 2208 0.4085 MEPLLKGESSAHRMRSPGLFQRRSHAIAYGSPSVKAAALVDLAEDGVGIPEQVLDSSEFQSSARFYFIFIKLNLLWSLGYFALLVLNFLEKPLWCEKYAAYSCDDREYFFLGQLPYLTGTECVIYEGITLLVLIVHIFFPISYEGSGIYWKKTVNQLKVLCLLVLVADMVVYALYLSPVTFYSLPVRFAPYVRVVLFILHIRELRATMTILAGMLSTYLNVLALGLLFLLFSSWVAYVMFEDTQQGKIVFTSFGTTLYQMLVLFTTSNNPDVWIPAYKASRWYCLFFILFVLLGVYFVTNLVLAVVYDSFKSELAKQVFEMDQMRRNMLGKAFDLLDNNHVGCLDKNQCIELFQELNKYRTLPKISRGEFELIFDELDDSRDVKINKDEFADICNAIALKFQKEDTPSYFEYFAFYHTPTSKKLKAFVRSLKFGYIISFILVLNLIAVIIETTLDIQNNSAQKVWQVVEFIFGWIYVIEMALKVYSYGFENYWRDGQNQFDFIITWVIVIGETVTFLTPDDPDLFSNGEWIRYLLLARMLRLIRLLMHVQQYRAFVATFLTLIPSLMPYLGTIFCVLCVYCSLGVQIFGGIVNAGNPKLDATDLADNDYLLFNFNDYPNGMVTLFNLVVMGNWQAWMQSYKELTGTSWTYIYFISFYLITVLLLLNLVVAFVLEAFFAEMELETSADCREEDDKEAEGERHRRRRVGTKTRSQRVDALLHHMLSSELCQAQPSDP 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03170 735 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 3 731 IPR044581 GO:0005245
Accr1g03170 735 Pfam Ion transport protein 124 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr1g03170 735 Pfam Ion transport protein 433 677 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr1g03170 735 FunFam Two pore calcium channel protein 1 203 314 - -
Accr1g03170 735 SUPERFAMILY Voltage-gated potassium channels 432 676 - -
Accr1g03170 735 MobiDBLite consensus disorder prediction 688 703 - -
Accr1g03170 735 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Accr1g03170 735 FunFam Two pore calcium channel protein 1 423 555 - -
Accr1g03170 735 FunFam Two pore calcium channel protein 1 556 714 - -
Accr1g03170 735 SUPERFAMILY EF-hand 320 413 IPR011992 -
Accr1g03170 735 Gene3D - 556 717 - -
Accr1g03170 735 Gene3D - 203 309 - -
Accr1g03170 735 MobiDBLite consensus disorder prediction 688 712 - -
Accr1g03170 735 Gene3D - 422 555 IPR027359 -
Accr1g03170 735 Gene3D - 310 394 - -
Accr1g03170 735 SMART efh_1 369 397 IPR002048 GO:0005509
Accr1g03170 735 SMART efh_1 328 356 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03170 Accr-Chr1 68468918 68483185 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03170 22 733 Ion Channels AT4G03560 69.425 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03170 K16900 - qsa:O6P43_028812 1103.2