Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03169 ATGGTACCTCCCACTTCTGCACAGTGTTCGCAAACAAAGATGGAGCCTTTGCTGAAAGGCGAAAGCAGTGCTCATAGGATGCGCTCGCCTGGGTTATTCCAGCGTCGCTCACATGCTATTGCTTACGGCTCGCCCTCCGTGAAAGCGGCTGCGCTTGTGGATCTGGCTGAAGATGGCGTCGGCATCCCAGAGCAAGTACTGGATTCGTCGGAATTTCAGAGTTCTGCTAGATTTTATTTTATATTCATTAAATTAAACTTGCTTTGGTCACTTGGTTACTTTGCCTTGCTAGTCCTGAATTTCCTTGAGAAACCCTTGTGGTGTGAAAAGTATGCCGCTTACTCTTGCGATGATAGAGAGTATTTCTTTCTGGGACAACTGCCATATCTAACTGGTACAGAATGTGTTATTTACGAGGGTATAACTCTTCTTGTGCTCATTGTGCATATTTTTTTCCCGATATCTTATGAGGGCTCCGGTATATATTGGAAAAAAACTGTTAATCAATTGAAGGTACTGTGTCTGTTAGTTCTGGTTGCTGATATGGTGGTTTATGCTCTGTATTTGTCTCCAGTGACTTTTTATTCTCTACCTGTCAGATTTGCACCTTATGTCAGGGTTGTTCTTTTCATTTTACATATTAGGGAATTACGAGCAACCATGACCATCTTGGCTGGAATGCTTAGCACATACCTGAATGTCCTGGCTTTGGGGCTTCTGTTTCTTCTTTTCTCAAGTTGGGTGGCGTATGTGATGTTTGAAGATACACAACAGGGGAAGATAGTATTCACTTCCTTTGGCACCACATTATATCAGATGCTTGTTTTATTCACCACATCCAATAATCCAGATGTTTGGATTCCTGCATACAAGGCTTCACGTTGGTATTGCCTGTTTTTTATTCTCTTTGTGCTGTTGGGGGTTTACTTTGTCACAAACTTGGTCCTTGCCGTTGTTTATGACAGTTTCAAGAGTGAGCTTGCAAAACAAGTTTTTGAGATGGATCAAATGAGAAGAAATATGTTGGGGAAAGCATTTGATCTATTAGATAACAATCATGTTGGGTGTCTTGACAAAAACCAGTGCATTGAACTCTTTCAGGAGCTGAACAAGTACAGGACTTTGCCAAAAATCTCCCGGGGAGAATTTGAGCTGATATTTGATGAGCTGGATGATAGTCGTGATGTCAAGATCAACAAGGATGAATTTGCTGATATTTGCAATGCCATTGCTTTAAAGTTCCAGAAGGAGGATACCCCATCTTACTTTGAGTATTTTGCATTCTACCACACTCCCACCTCCAAGAAGTTGAAAGCATTTGTGCGGAGCCTGAAGTTTGGATACATAATATCCTTCATTCTTGTATTGAATCTGATCGCTGTTATAATTGAGACAACGCTTGATATACAAAATAATTCTGCTCAAAAGGTGTGGCAAGTGGTTGAGTTTATTTTTGGATGGATATATGTAATAGAAATGGCTTTAAAAGTGTATTCATATGGATTCGAGAATTATTGGCGGGATGGTCAGAATCAATTTGACTTTATCATCACCTGGGTAATTGTCATTGGAGAAACTGTAACTTTTCTTACACCTGATGACCCGGATCTTTTCTCAAATGGAGAATGGATTCGCTACCTTCTTCTTGCAAGAATGTTGAGGTTGATAAGGCTCCTAATGCATGTCCAGCAATACCGAGCCTTTGTGGCAACCTTCCTAACCCTCATACCAAGTTTGATGCCATACCTTGGAACCATATTTTGTGTCTTGTGTGTTTATTGCTCCCTTGGTGTACAGATCTTTGGCGGAATTGTCAATGCTGGAAATCCCAAATTGGATGCAACAGATCTTGCTGACAATGACTATCTGCTCTTTAATTTTAATGATTATCCAAATGGAATGGTTACACTTTTCAATTTGGTAGTCATGGGAAACTGGCAAGCATGGATGCAGAGCTACAAGGAATTAACGGGGACTTCTTGGACCTATATTTACTTTATTAGCTTCTACTTAATAACTGTTCTGCTACTTTTGAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTTGCTGAAATGGAGCTTGAGACGTCTGCTGATTGTAGAGAAGAGGATGACAAGGAAGCTGAAGGAGAGAGACATCGAAGACGACGTGTTGGCACCAAAACACGGAGCCAAAGGGTTGATGCTCTTCTTCATCATATGTTGAGCTCCGAGTTATGTCAAGCACAGCCTTCCGATCCATAA 2247 0.4099 MVPPTSAQCSQTKMEPLLKGESSAHRMRSPGLFQRRSHAIAYGSPSVKAAALVDLAEDGVGIPEQVLDSSEFQSSARFYFIFIKLNLLWSLGYFALLVLNFLEKPLWCEKYAAYSCDDREYFFLGQLPYLTGTECVIYEGITLLVLIVHIFFPISYEGSGIYWKKTVNQLKVLCLLVLVADMVVYALYLSPVTFYSLPVRFAPYVRVVLFILHIRELRATMTILAGMLSTYLNVLALGLLFLLFSSWVAYVMFEDTQQGKIVFTSFGTTLYQMLVLFTTSNNPDVWIPAYKASRWYCLFFILFVLLGVYFVTNLVLAVVYDSFKSELAKQVFEMDQMRRNMLGKAFDLLDNNHVGCLDKNQCIELFQELNKYRTLPKISRGEFELIFDELDDSRDVKINKDEFADICNAIALKFQKEDTPSYFEYFAFYHTPTSKKLKAFVRSLKFGYIISFILVLNLIAVIIETTLDIQNNSAQKVWQVVEFIFGWIYVIEMALKVYSYGFENYWRDGQNQFDFIITWVIVIGETVTFLTPDDPDLFSNGEWIRYLLLARMLRLIRLLMHVQQYRAFVATFLTLIPSLMPYLGTIFCVLCVYCSLGVQIFGGIVNAGNPKLDATDLADNDYLLFNFNDYPNGMVTLFNLVVMGNWQAWMQSYKELTGTSWTYIYFISFYLITVLLLLNLVVAFVLEAFFAEMELETSADCREEDDKEAEGERHRRRRVGTKTRSQRVDALLHHMLSSELCQAQPSDP 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03169 748 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Accr1g03169 748 SMART efh_1 341 369 IPR002048 GO:0005509
Accr1g03169 748 SMART efh_1 382 410 IPR002048 GO:0005509
Accr1g03169 748 FunFam Two pore calcium channel protein 1 216 327 - -
Accr1g03169 748 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 15 744 IPR044581 GO:0005245
Accr1g03169 748 Gene3D - 216 322 - -
Accr1g03169 748 Gene3D - 569 730 - -
Accr1g03169 748 Gene3D - 323 407 - -
Accr1g03169 748 SUPERFAMILY EF-hand 333 426 IPR011992 -
Accr1g03169 748 MobiDBLite consensus disorder prediction 701 716 - -
Accr1g03169 748 FunFam Two pore calcium channel protein 1 436 568 - -
Accr1g03169 748 Gene3D - 435 568 IPR027359 -
Accr1g03169 748 Pfam Ion transport protein 137 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr1g03169 748 Pfam Ion transport protein 446 690 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr1g03169 748 SUPERFAMILY Voltage-gated potassium channels 445 689 - -
Accr1g03169 748 MobiDBLite consensus disorder prediction 701 725 - -
Accr1g03169 748 FunFam Two pore calcium channel protein 1 569 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03169 Accr-Chr1 68468918 68483224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03169 35 746 Ion Channels AT4G03560 69.425 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03169 K16900 - qsa:O6P43_028812 1103.2