Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03159 ATGGATCATCTTCATCAGCAACGAGTTCAAGATCCTTCACAAACCAAGATTGAAAGAAGGCTCATAGAGAAAAACAGAAGAAACCAGATGAAGATCCTCTACTCCAAACTCAATTCCCTTCTCCCAAACTTCAACCCTAAGCAAATGATTCCGCTTCCTGATCAGATAGACGAGGCCATAAATTATATAAAGAGTTTAGAGGCAAAGGTGAAGATGGTTCAGGAGAGGAAGGAGAGGTTGATGATCGGAAAGAAAAGGTCACATGCTTGTTGTAGCTCTAGTTCTTTTGAGACAGAGAGAAGGAGAAGCCTGATGAATTCACCACAAATTCAAATTCATGAAATGGGTTCGTCTCTAGAAGTAGTTCTGATTAATGGTTTGGATAATCAGTTCATATTCCATGAGATTATTTGCATACTGCACCAAGAGAACGTGGAGGTCGTGAGTGCCAAGTCCTCACTCGTCAGAGATTCCATGCTAAATGTTGTACACGCACAGATTCAGCCATCTTTGCATGAATTCGGAGCTACCAAAGTAATCGAGAGATTGAAAAGGTTTGTGTATGGATCTACCAGTGATGTAGAAACAGTACAGCCAGCCGAGTTGCAAGATTATTTCCTGATTGGTACGGATGCATGGGAGTTCTTTTAA 651 0.4117 MDHLHQQRVQDPSQTKIERRLIEKNRRNQMKILYSKLNSLLPNFNPKQMIPLPDQIDEAINYIKSLEAKVKMVQERKERLMIGKKRSHACCSSSSFETERRRSLMNSPQIQIHEMGSSLEVVLINGLDNQFIFHEIICILHQENVEVVSAKSSLVRDSMLNVVHAQIQPSLHEFGATKVIERLKRFVYGSTSDVETVQPAELQDYFLIGTDAWEFF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03159 216 Coils Coil 56 83 - -
Accr1g03159 216 Gene3D - 5 93 IPR036638 GO:0046983
Accr1g03159 216 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 188 - -
Accr1g03159 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 84 IPR036638 GO:0046983
Accr1g03159 216 SMART finulus 20 72 IPR011598 GO:0046983
Accr1g03159 216 Pfam Helix-loop-helix DNA-binding domain 18 67 IPR011598 GO:0046983
Accr1g03159 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 66 IPR011598 GO:0046983
Accr1g03159 216 FunFam Transcription factor bHLH162 8 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03159 Accr-Chr1 68383623 68384716 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03159 17 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.143 1.14e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr1g03159 HLH 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03159 - - gmx:100817883 241.121