Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03144 ATGGATGAGACCAAACCAAAGACGGTGGTGAAGAGGGAGGCCTTGGGGGGTTACGACGACAAGAAAAATGGATTCTTGTCGGGGGAAGATGACCTGAGGAAGACGAGAGTGTCCGTGAAGAAAGGGTCTGCCGGTGGCGGAGGGAGTGGTCTGCGGTGTTGCCAGGCGGAGAACTGCTCGGCGGAGCTCAGTGATGCGAAGCCGTATCATAAGAGGCACAAGGTGTGCGAATATCACGCCAAGGCTCAGGAAGTGATTGTTTCAGGCATCCGACAACGTTTTTGTCAGCAATGCAGCAGATTCCATGAGTTAGGTGAGTTTGATGAGACGAAAAGAAGTTGTAGGAGGCGTTTGGCTGGGCACAACGAACGAAGAAGGAAGAGCTCAATGAGTGAGACTGAGTCAGAAGGGTCGAGCCAGAAAAGAACAGGTACTCATCAGCTGAAGGACAGGGTTTATGGTGGTGGTGGTGGTGACGATAGAGGCAGATCAATTCAGATCACTATATAA 510 0.5137 MDETKPKTVVKREALGGYDDKKNGFLSGEDDLRKTRVSVKKGSAGGGGSGLRCCQAENCSAELSDAKPYHKRHKVCEYHAKAQEVIVSGIRQRFCQQCSRFHELGEFDETKRSCRRRLAGHNERRRKSSMSETESEGSSQKRTGTHQLKDRVYGGGGGDDRGRSIQITI 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03144 169 ProSiteProfiles Zinc finger SBP-type profile. 51 128 IPR004333 GO:0003677
Accr1g03144 169 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 154 IPR044817 GO:0003677
Accr1g03144 169 MobiDBLite consensus disorder prediction 118 169 - -
Accr1g03144 169 FunFam Squamosa promoter-binding-like protein 14 46 115 - -
Accr1g03144 169 Pfam SBP domain 54 127 IPR004333 GO:0003677
Accr1g03144 169 SUPERFAMILY SBT domain 52 132 IPR036893 GO:0003677|GO:0005634
Accr1g03144 169 MobiDBLite consensus disorder prediction 143 157 - -
Accr1g03144 169 Gene3D - 45 115 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03144 Accr-Chr1 68250365 68251287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03144 34 141 SBP-box Gene Family AT1G53160 63.889 1.73e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Accr1g03144 SBP 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03144 - - twl:120003746 186.422