LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g03087	ATGGCAGAGACACGAGAGGATTCAGGGCCCACAGAGCAAGGGCCCTCTAATGCTTCTTGGTGGCCTTCAGAGTTCGTTGAAAAGCTTGGATCTGTTTCTTTGGGATCTCAAGATGAGGCCTTAAACAATAAAGAATCACCTAGACATTCAGGGCAAGGTGATATGTCACCTTATAGAGCGTCTCAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGGTTTTATTCAGTCATTCCGGAGAAAAGACTCAAGGAGCTCTTTCATAATATTCCTACTTTGGAAGAGCTTCTTGCTTTGGGAGGAGAGGGTTTTAGGGCTGATATCATTCTTGTGGATGCCGAAAAAGATAAAAAGCTATCCATGTTGAAGCAGCTAGTGGTGGCGCTAGTTAAAGGATTGAACTCAAATCCAGCTGCAGTTATTAAGAAAATAGCAGGATTAGTTGCTGATTTTTACAAGCGGCCAAATGTAGAAAGTCCAGCAAAAGCTGCACTGGAAGAAACCTCCCACATGTTCGAGAGTCGAAGTGTTCAGTTGCTGGGGCAGATAAAGCATGGTTCATGTCGTCCTCGAGCGATCTTGTTTAAAGTTTTAGCTGATGCTGTAGGCCTTGAAAGTAAACTAATGGTGGGTTTGCCAGACGATGGGGTCCCTGAATGTGCAGATTCATACAAGCATTTGTCTGTCGTAGTTGTATTAAATTCTGTGGAGCTATTGGTTGATCTCATGCGATTCCCTGGCCAATTATATCCACAGTCAACCAAAGCAATTTATATGACGCATATTTCTGCAGCAGGAGAGAGTGATTCTGCAGAGAATGATTCCTGTGATTCGCCATTAGAACCGAACAGTCCTTTATATGGGGTTTCAGAGACAGTAGATATTGACAGTGCTGAAAGAGAGGAAAATCTCCAATTTCACAGAAGACATGAAGCATCTTCAAATTTATCAGGCTTCTCTTTACGAAATGCTATGTTACGTTCAAATGTCATTCTGGACAATAAATTGAGTCCAGAACATCCCTCATTTCGAGCACGTGCGCGGTCCATGCTTAGCGGTGATAGGAAAACATTTAGAGATTTTGCTGATGACGGCGCTACATCAAGCTACAGGTCAAATGGTGCACCCTCATCAGAAGCTCGGAGGATCAGAAGAAGAAGCATCAGCATTACACCAGAAATTGGTGACGATATCGTAAGGGCTGTACGGGCAATGAATGAAACACTAAAGCAGAATCGTCTGTTGAGAGAGCAGAGGGATGATCGATCCTTCTCACATTCTCCAACCGCTAGAAGTAGTGGTGGTGATCTTCAGAAAAATGTTTCAAACTTCCATCTTGGTCATGATGAAAGATCTGCTTTATATTCTCTTAAGCATGACCAAGAATCTTCTCAAAAGGCAATGTCGTTACCCTCTTCGCCACATGAATATAGGGGTGAAGCATCTGGGAGATGTGGACCATCAGGATATGGATTAAATAATGAGCTACAAGCAACTTGGAACAGAGTCCTTGAGTCTCCAATGTTCAATAACAAACCTCTGTTACCATATGAAGAATGGAATATTGACTTCTCAGAACTAACTGTTGGGACTCGTGTTGGGATTGGGTTCTTTGGAGAGGTATTCCGAGGCATATGGAATGGAACAGATGTTGCCATAAAGGTGTTCCTGGAGCAAGATTTGACTACTGAAAACATGGAAGATTTCTGCAATGAGATAACAATTCTCAGCCGGCTTCGACATCCTAATGTTATTTTATTTCTTGGCGCATGCACAAAGCCTCCACGTTTGTCAATGGTTACTGAGTACATGGAGATGGGATCTTTGTATTACTTGATCCATTTAAGTGGTCAAAAGAAGAAGCTTAGTTGGCAGAGAAGACTGAAGATGCTACGGGATATATGCAGGGGGCTGATGTGCATACATCGTATGAAGATAGTTCACCGCGACCTGAAAAGTGCCAATTGTCTTGTGAACAAGCATTGGACTGTTAAGATCTGTGATTTTGGGCTCTCAAGAATAATGACAGAGTCTCCCATGAAAGATTCTTCATCAGCGGGAACTCCAGAATGGATGGCTCCTGAACTTATTCGAAACGAACCATTCACGGAAAAATGTGACATCTTTAGCCTTGGGGTCACAATGTGGGAGCTTTGCACTCTAAGCAGGCCCTGGGAAGGCGTACCCCCTGAGAGGGTAATTTATGCCGTTGCTAACGAGGGATCCAGACTGGAGATTCCTGAGGGTCCACTGGGCAGGCTGATTTCAGATTGTTGGGCGGAACCTCATGAACGGCCTAGTTGTGAAGACATCCTTTCTCGTTTGCTTGACTGCGAATACTCATTGTGCTGA	2364	0.437	MAETREDSGPTEQGPSNASWWPSEFVEKLGSVSLGSQDEALNNKESPRHSGQGDMSPYRASQILWRTGMLSEPIPNGFYSVIPEKRLKELFHNIPTLEELLALGGEGFRADIILVDAEKDKKLSMLKQLVVALVKGLNSNPAAVIKKIAGLVADFYKRPNVESPAKAALEETSHMFESRSVQLLGQIKHGSCRPRAILFKVLADAVGLESKLMVGLPDDGVPECADSYKHLSVVVVLNSVELLVDLMRFPGQLYPQSTKAIYMTHISAAGESDSAENDSCDSPLEPNSPLYGVSETVDIDSAEREENLQFHRRHEASSNLSGFSLRNAMLRSNVILDNKLSPEHPSFRARARSMLSGDRKTFRDFADDGATSSYRSNGAPSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLREQRDDRSFSHSPTARSSGGDLQKNVSNFHLGHDERSALYSLKHDQESSQKAMSLPSSPHEYRGEASGRCGPSGYGLNNELQATWNRVLESPMFNNKPLLPYEEWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTTENMEDFCNEITILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGQKKKLSWQRRLKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMTESPMKDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVTMWELCTLSRPWEGVPPERVIYAVANEGSRLEIPEGPLGRLISDCWAEPHERPSCEDILSRLLDCEYSLC	787

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g03087	787	Gene3D	Transferase(Phosphotransferase) domain 1	610	785	-	-
	Accr1g03087	787	SUPERFAMILY	Protein kinase-like (PK-like)	506	779	IPR011009	-
	Accr1g03087	787	Gene3D	Phosphorylase Kinase; domain 1	524	609	-	-
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	416	446	-	-
	Accr1g03087	787	FunFam	Serine/threonine-protein kinase isoform 1	521	609	-	-
	Accr1g03087	787	Pfam	Ethylene-responsive protein kinase Le-CTR1	59	253	-	-
	Accr1g03087	787	CDD	STKc_MAP3K-like	537	779	-	-
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	462	487	-	-
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	1	21	-	-
	Accr1g03087	787	Pfam	Protein tyrosine and serine/threonine kinase	532	779	IPR001245	GO:0004672\|GO:0006468
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	365	388	-	-
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	416	430	-	-
	Accr1g03087	787	ProSitePatterns	Protein kinases ATP-binding region signature.	537	558	IPR017441	GO:0005524
	Accr1g03087	787	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	322	779	-	-
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	36	57	-	-
	Accr1g03087	787	SMART	serkin_6	531	780	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g03087	787	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	650	662	IPR008271	GO:0004672\|GO:0006468
	Accr1g03087	787	ProSiteProfiles	Protein kinase domain profile.	531	786	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr1g03087	787	MobiDBLite	consensus disorder prediction	36	50	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g03087	Accr-Chr1	67797436	67806481	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g03087	1	787	MAP Kinase Kinase Kinase	AT3G58640	68.987	0.0	1142

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Accr1g03087		PK_Tyr_Ser-Thr	9.7e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g03087	-		-	gmx:100810612	1321.61