Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g03078 ATGCCCTTTGGGCCGCACCACCATCAACTACCGCCAGCGACCGCTCCACAACCACCACCACTACAAGCTGAAAATGACTCGCTGAAGGTGTCTGCTCGCCGTGGCTCCGATATGGAGACCGATAAGGATATGTCAGCTACTGTTGCCGAGGGGAATGATGCAGTCACCGGTCACATAATATCCACCACAATTGGAGGCAAAAATGGGGAACCTAAACAGACCATCAGTTACATGGCAGAACGGGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACCGGGGAAGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAGAATCGCGAATTGCAGTTGATGCGTTTGATGGATCATACAAATGTGATTTCTCTGAAGCACTGTTTCTTCTCTACAACTAGCAGAGATGAACTTTTTCTTAACTTGGTTATGGAATATGTCCCTGAGACAATGTATCGAGCTCTAAAACATTACAGTAGTATGAACCAGAGGATGCCCCTCATCTATGTGAAACTTTACACTTACCAAATCTTTAGGGGACTGGCATATATCCATACTGTACCTGGAGTTTGCCATAGAGATGTGAAGCCTCAAAATCTTTTGGTTGATCCTCTCACACACCAAGTGAAGCTTTGTGATTTTGGGAGTGCAAAAGTTTTGGTAAAGGGTGAATCAAACATTTCCTATATATGTTCACGTTACTATCGAGCTCCAGAACTAATATTCGGTGCAACAGAATACACAACTTCAATTGATATCTGGTCGGCTGGTTGTGTACTTGCTGAGCTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATCAAGGTTCTTGGCACCCCAACTCGAGAAGAAATTCGCTGCATGAACCCAAATTATACTGATTTTAGATTTCCACAGATTAAAGCTCACCCTTGGCACAAGGTTTTTCATAAGCGAATGCCTCCTGAAGCGATTGACCTTGCCTCAAGGCTTCTCCAATATTCACCCAGTCTTCGATGCACTGCGCTGGAAGCATGTGCACATCCCTTCTTCGATGAGCTTCGTGAACCTAATGCCAGACTACCTAATGGCCGCTCTCTGCCCGCACTTTTCAACTTTAAACAGGAACTGTCCGGAGCATCACCTGAATTGATCAGTAAGCTCATCCCAGAGCATGTTAGGCGGCAGAGTATTCTGGGCTTCCAGATTCCACCTGGTACATAG 1254 0.4577 MPFGPHHHQLPPATAPQPPPLQAENDSLKVSARRGSDMETDKDMSATVAEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHTNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRALKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRSLPALFNFKQELSGASPELISKLIPEHVRRQSILGFQIPPGT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g03078 417 SMART serkin_6 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03078 417 FunFam Glycogen synthase kinase-3 beta 61 156 - -
Accr1g03078 417 Pfam Protein kinase domain 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03078 417 ProSitePatterns Protein kinases ATP-binding region signature. 83 107 IPR017441 GO:0005524
Accr1g03078 417 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g03078 417 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 42 406 - -
Accr1g03078 417 FunFam Shaggy-related protein kinase kappa 157 404 - -
Accr1g03078 417 Gene3D Phosphorylase Kinase; domain 1 62 156 - -
Accr1g03078 417 MobiDBLite consensus disorder prediction 1 19 - -
Accr1g03078 417 CDD STKc_GSK3 72 364 IPR039192 -
Accr1g03078 417 MobiDBLite consensus disorder prediction 1 47 - -
Accr1g03078 417 SUPERFAMILY Protein kinase-like (PK-like) 76 387 IPR011009 -
Accr1g03078 417 MobiDBLite consensus disorder prediction 30 46 - -
Accr1g03078 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Accr1g03078 417 Gene3D Transferase(Phosphotransferase) domain 1 157 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g03078 Accr-Chr1 67669253 67674098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g03078 81 399 MAP Kinase Gene Family AT3G59790 35.329 1.70e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Accr1g03078 Pkinase 3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g03078 K14502 - qsa:O6P43_000832 747.658