LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g03073	ATGAATTACCCTATATTCCCAGGCAGCTCATCTTCTCGGAGGACCTGGAAATACGAAGTATTTCTCAGTTTCAGAGGTGAGGATACTCGTAACAGTTTCGCTGGTCATCTTTTTTCTGCTCTTCAACGGAAAGGTATATTTACCTTCAAGGATGACCAAAGGCTCGAGAAAGGAGAAGCCATTAAACCTGAGCTCCTCAAAGCAATTGAGCAATCCCGAATTTCTTATGTCGTCTTCTCCCAAAACTATGCCGAATCGTCATGGTGCTTGGATGAACTGGCAAAGATATCTGAGGGAATTAGCGAACCGGGATACTTTATTGTGCCAATTTTCTTCGATGCCGATCCATCTGATGTTCGAAGACAGAGTGGGAAATTTAAAGAATTCTTTGATAAACATGAAAGAGAGTTTAGTGATAATATAGATAAGGTACAGAGATGGAGGATAGCATTGACTCAAGTAGGCAGTCTCGCTGGTTATGATGTACGGGCTAAATCAGAGTCAGATATTATTGATGAAATTGTTACAGATGCAATACGCAAATTGGGTCATAGATTCTCAAGTCTGGCTGATGATCTAGTTGGGATGCAACCTCGTGCAGAAGCATTTGAGAACCTGTTAGATTTAGAATCAGAAGATGTTCGAAAGGTAGGTATGTGGGGGATGCCTGGAGTAGGGAAGACTACTTTAGCTGCAGTTGTATATGATAGAATCTCCCACCGATTTGATGCTTGTTGTCTACTTCTTGATGTAAGTAAAGTTCACAAGGGTCCTGGACTTGTACGTCTGCAAAAGCAACTCCTCCGTGAAACGCTGCAGGAAGATATAGAGATATGGGAGGATCATAGGGGAACCAATTTAATAAGCACTAGGCTTCACCACCTAAAAACTCTTATTCTTGTTGACAATGTTGATCATGCTGATCAATTGGAGAAACTGGTTGGAAAGTCCACATGGTTCGGACCGGGGAGTAGGATCATCATAACAACTAGAGATAAGCATATCCTAACCAGGCATGGAGTGGATGAAGTTTACGAGGTTAAACTACTGAATGAAGATGAAGCTCTTCAGCTTCTCTGTAGAAGAGCCTTCAAACAAGATGATCCTTTGAGTGACTTTAAAGGTATGACTCATAGTCTGCTACAATATGCTAAAGCCCTTCCACTAGTGATCAAAGTGTTAGGTTCCTTTATGTATGGGCTGGAAAAATCAGAGTGGATTGATCAGTTAGAGAGGTTGAAAGAAAATCCTGACCAAGAGGTTATGGGAGTTCTTGAAACAAGTTTTGTTCGGCTTGAGAAAAAGGACAGGGATATATTTATAGACATTGCTTGTTTCTTTAAGGGAGCAGATGAGAACTATGTCACAAAAATTCTAGAACATTGTGGATTCAATCCAAAGATTGGAATTAGAGTTCTCCGTGACAGATCACTCCTGAACACTGTCAATGGAACATTCTGGATGCATGATATGCTACAAGAACTGGGATGGAAATTTGCAAAGGGAGAATTTCCTGATGAGCCAGCAAAGTGGAGTAGGTTGTGGTCATACAAAGATATTCAAACTGTAAAGACAGGAACGGAAAAAGTTGAAGCCATTGTCCTGAACCCAGATGATCTGCAAGAGACGCCATTGAAGGCTGAAGCTTTATCACAAATGAGCCGCCTCAGACTAATCATATTCCCTAATAATGTGAAATTTTCAGGAAACCTCAATAACCTGTCCAACGAGTTACGAGTTCTTTCATGGCACAAATTCCCTTTCAGCTCTTTGCCATCAAGTTTTGAACCAGAGAAACTTGTTGAGCTGATCATGCCTGACAGCAACGTAAAACAACTATGGGAAGGCAAAAAGCGATTGCCAAAGTTGAGAAACATGGATCTGCGTGGCTCTAAAAGTCTAATCAAGACGCCAAATGTTAAAGGAGTAGAAAATCTTGAGAAGTTAGATCTTGAAGGATGTAGTGGATTATTGCAGGTCGATTCGTCTGTCGGAGATCTTAAAAGTATCACGTTCCTGAATTTGAGAAACTGTGATCATCTAATCAGTATCCCAAACACCTTATTTCTGTTAACTTCTCTTGAGATTCTAAACCTGGCTGGTTGTTCAAGACTTGCAAAATGGTTGAACTTTGAAGGACCTCGATAG	2148	0.4083	MNYPIFPGSSSSRRTWKYEVFLSFRGEDTRNSFAGHLFSALQRKGIFTFKDDQRLEKGEAIKPELLKAIEQSRISYVVFSQNYAESSWCLDELAKISEGISEPGYFIVPIFFDADPSDVRRQSGKFKEFFDKHEREFSDNIDKVQRWRIALTQVGSLAGYDVRAKSESDIIDEIVTDAIRKLGHRFSSLADDLVGMQPRAEAFENLLDLESEDVRKVGMWGMPGVGKTTLAAVVYDRISHRFDACCLLLDVSKVHKGPGLVRLQKQLLRETLQEDIEIWEDHRGTNLISTRLHHLKTLILVDNVDHADQLEKLVGKSTWFGPGSRIIITTRDKHILTRHGVDEVYEVKLLNEDEALQLLCRRAFKQDDPLSDFKGMTHSLLQYAKALPLVIKVLGSFMYGLEKSEWIDQLERLKENPDQEVMGVLETSFVRLEKKDRDIFIDIACFFKGADENYVTKILEHCGFNPKIGIRVLRDRSLLNTVNGTFWMHDMLQELGWKFAKGEFPDEPAKWSRLWSYKDIQTVKTGTEKVEAIVLNPDDLQETPLKAEALSQMSRLRLIIFPNNVKFSGNLNNLSNELRVLSWHKFPFSSLPSSFEPEKLVELIMPDSNVKQLWEGKKRLPKLRNMDLRGSKSLIKTPNVKGVENLEKLDLEGCSGLLQVDSSVGDLKSITFLNLRNCDHLISIPNTLFLLTSLEILNLAGCSRLAKWLNFEGPR	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g03073	715	Pfam	Leucine Rich Repeat	599	618	IPR011713	-
	Accr1g03073	715	Gene3D	-	349	433	IPR042197	-
	Accr1g03073	715	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	443	IPR027417	-
	Accr1g03073	715	PRINTS	Disease resistance protein signature	291	305	-	-
	Accr1g03073	715	PRINTS	Disease resistance protein signature	216	231	-	-
	Accr1g03073	715	PRINTS	Disease resistance protein signature	384	398	-	-
	Accr1g03073	715	PRINTS	Disease resistance protein signature	641	657	-	-
	Accr1g03073	715	Gene3D	-	14	184	IPR035897	-
	Accr1g03073	715	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	184	-	-
	Accr1g03073	715	SUPERFAMILY	L domain-like	502	704	-	-
	Accr1g03073	715	Pfam	NB-ARC domain	210	415	IPR002182	GO:0043531
	Accr1g03073	715	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	160	IPR035897	-
	Accr1g03073	715	Gene3D	Ribonuclease Inhibitor	518	711	IPR032675	-
	Accr1g03073	715	ProSiteProfiles	TIR domain profile.	16	182	IPR000157	GO:0007165
	Accr1g03073	715	SMART	till_3	17	157	IPR000157	GO:0007165
	Accr1g03073	715	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	709	IPR044974	GO:0006952
	Accr1g03073	715	Pfam	TIR domain	17	192	IPR000157	GO:0007165
	Accr1g03073	715	Gene3D	-	185	345	IPR027417	-
	Accr1g03073	715	SUPERFAMILY	"Winged helix" DNA-binding domain	420	521	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g03073	Accr-Chr1	67640567	67643213	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr1g03073	6	708	WRKY Transcription Factor Family	AT4G12020	32.320	5.36e-101	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g03073	-		-	pcin:129315185	1030.39