Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02998 ATGGCCACTGCAGACCTACACAGCTCACGTGCTTCACGGGTGCACGATAGCCACCACACAACAGATGACGACGAGGATTACAGCGTCACGGACGACGCCGAGGAGGAGACGGACGGAGAAGAAGAGACCAACGGAGCAGACGACGGCGACGACAAGGCGGTGGGGTGGTGTTGGCGGCGGAAAGGCGTGGGCGGACGAAGCAGCGGTTACTGGGGGAAGGTGTTGGACCCGAGGGCCAAGTGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCGATGGGGCTGTTCGTGGACCCACTCTTCTTCTACGCCCTATCGGTGAGCGACAAGTGCATGTGCCTCTTCGTCGACGGATGGTTTGCCGTCACCGTCACGGCGCTCCGCTGCATGACTGACGCCTTGCACCTCTGGAACATGTGGCTTCAGTTCAAAATGGGGAAGCGCCACTTTGGAAGTGGCCTAACCGTCGATACTAACCGTCGCTGGGTGGCTCTTCGCTATCTGAAGCTCAAGACCGGCTTCTTCTTCGACCTCTTCGTCATCCTCCCTCTGCCACAGATTGTACTATGGGTTACAATCCCGTATCTGTTGGAGAGAGGATCAGTGACATTGGTGATGACGGTGTTCTTAATAATGTTTCTGTTTCAATATCTTCCCAAGATATATCACTCCGTTTGCGTCTTGCGACGCCTCCAAAACCTCTCTGGCTACATTTTTGGCACCGTTTGGTGGGGAATTGCACTCAACTTGATCGCCTATTTCGTGGCCTCCCACGCAGCAGGGGCATGCTGGTACTTGCTAGGGATTCAGAGAGCGGCCAAGTGTTTAAAAGAGCAATGTGGGAGAACAAGTGGGTGTGGCTTAAGAATACTGTCGTGTAAGGAACCAGTCTATTATGGAACAAATGGAATGGCGAGGGATACAGCCAGACTTTCATGGGCAGAGAACAGGCAAGTGAGGTCGACTTGCTTGTATGGCCCTGATAACTACGACTATGGAGCTTATAAATGGACCGTTCAGCTCGTCACCAACGATAGCCGACTTGAAAAGATACTCTTCCCTATCTTTTGGGGCCTCATGACTCTCAGCACTTTCGGGAACCTAGAGAGCACAACAGAATGGCTAGAAGTGGTCTTCAACATCATTGTTTTGACCAGCGGCCTCATTCTTGTCACCATGTTGATTGGAAACATCAAGGTGTTTCTGCATGCAACGACATCAAAGAAGCAAGCGATGCAGCTGAAGATGAGGAACATTGAATGGTGGATGAGGAAGAGGCACCTGCCTTCCGAGTTTCGGCAGCGCGTGCGCAACTACGAACGGCAGCGATGGGCCGCCATGCGTGGCGTCGACGAGTTCGAGATGATCAGAAACCTACCGGAGGGCCTCCGAAGAGACATCAAGTACCATCTCTGCTTGGACTTGGTCCGACAGGTCCCGTTATTTCAGCACATGGATGAACTTGTGCTAGAGAACATCTGCGACCGCGTGAAGTCACTCATATTCACAAAAGGAGAAACAATAACGAGAGAGGGAGATCCAGTTCAGAGAATGCTGTTCGTGGTGAGGGGTCACCTTCAGAGCAGTCAGGTGCTGAGAGACGGCGTGAAAAGTTACTGCATGTTAGGGCCGGGGAACTTCAGTGGCGACGAGCTTCTATCGTGGTGTCTGAGGAGGCCGTTCATAGAGCGGCTGCCGCCGTCGTCGTCGACGCTCATCACCCTGGAAACGACGGAGGCGTTTGGGCTGGAGGCGGAGGACGTCAAGTACGTGACGCAGCACTTCAGGTACACGTTCATGAACGAGAAGGTGAAGAGGAGCGCCAGGTATTACTCGCCGGGGTGGAGGACTTGGGCGGCGGTGGCGATTCAGCTGGCGTGGCGGAGGCACAAGCACCGTCTGACGTTATCGTCGCTGTCGTTCATAAGGCCCAGAAGGCCAGTGTCTCGGTGCTCTTCCCTTGGAGAGGACAGGCTTCGCCTCTACACTGCCTTGCTCACCTCACCGAAGCCTAATCAGGATGATTTTGACTACTGA 2043 0.5404 MATADLHSSRASRVHDSHHTTDDDEDYSVTDDAEEETDGEEETNGADDGDDKAVGWCWRRKGVGGRSSGYWGKVLDPRAKWVQEWNRVFLLVCAMGLFVDPLFFYALSVSDKCMCLFVDGWFAVTVTALRCMTDALHLWNMWLQFKMGKRHFGSGLTVDTNRRWVALRYLKLKTGFFFDLFVILPLPQIVLWVTIPYLLERGSVTLVMTVFLIMFLFQYLPKIYHSVCVLRRLQNLSGYIFGTVWWGIALNLIAYFVASHAAGACWYLLGIQRAAKCLKEQCGRTSGCGLRILSCKEPVYYGTNGMARDTARLSWAENRQVRSTCLYGPDNYDYGAYKWTVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLILVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRHLPSEFRQRVRNYERQRWAAMRGVDEFEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFMNEKVKRSARYYSPGWRTWAAVAIQLAWRRHKHRLTLSSLSFIRPRRPVSRCSSLGEDRLRLYTALLTSPKPNQDDFDY 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02998 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 645 - -
Accr1g02998 680 SUPERFAMILY Voltage-gated potassium channels 77 404 - -
Accr1g02998 680 CDD CAP_ED 483 589 IPR000595 -
Accr1g02998 680 MobiDBLite consensus disorder prediction 9 25 - -
Accr1g02998 680 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Accr1g02998 680 MobiDBLite consensus disorder prediction 26 47 - -
Accr1g02998 680 Pfam Ion transport protein 85 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Accr1g02998 680 MobiDBLite consensus disorder prediction 1 51 - -
Accr1g02998 680 Gene3D Helix hairpin bin 408 474 - -
Accr1g02998 680 Gene3D Jelly Rolls 481 599 IPR014710 -
Accr1g02998 680 FunFam cyclic nucleotide-gated ion channel 4 481 599 - -
Accr1g02998 680 Pfam Cyclic nucleotide-binding domain 504 591 IPR000595 -
Accr1g02998 680 SUPERFAMILY cAMP-binding domain-like 409 597 IPR018490 -
Accr1g02998 680 ProSiteProfiles cAMP/cGMP binding motif profile. 483 593 IPR000595 -
Accr1g02998 680 SMART cnmp_10 483 612 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02998 Accr-Chr1 66744789 66751256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02998 64 679 Ion Channels AT5G54250 79.937 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02998 K05391 - zju:107430493 1121.69