Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02994 ATGAACGAGAAGGCTAACGTGTCTAAGGAGCTTAACGCCAAGCATAAAAAGATACTTGAAGGACTTCTTAAATTGCCAGAAAATAGGGAATGTGCTGACTGCAAAGCTAAGGGACCAAGATGGGCTAGTGTGAATCTAGGCATCTTTATATGCATGCAGTGCTCTGGAATTCATCGAAGTCTGGGGGTACATATATCAAAGGTGCGTTCTGCAACTTTGGACACTTGGCTACCAGAGCAGGTTGCCTTCATTCAATCAATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAATATGAAGAGAAGAGGTGGGTAGCAAAGGATGGGAAACCAACATCCCCTTCTAGACTGCAAGGACAAGGAGACAAGGCTTCTTCACATTGGCAGAGGCCTGCAGAAAAAAGTGGGCATGTTTCTCATGCATCTGCTGCTGAGAATACTTTTGAGGAAAGGAAGAAAGTTCAACCATCAAATACAACTCCTGCTACTAAATTTAGCGTTTCCGCTCCCCCAAAAGGACCTCAGCTGGCAATACCTGTCATAAAACCTCAGCATGTTGAGAAAGTGGAAGCGGTGGCACCCCAACCTCAAGCTGAGACAACAAAACCAGCTAATGATATGCCAGAGAGTACCCCTGCAAAAGTTGACTATGCCACAGATCTGTTTGACATGTTGTCTATGGATGGCCCTAGTGAAAATGATTCCAATGCCGCCGCCGCCACAGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCTACAGGGGCATCAACAGCAGAGAAGACTAGTCCCACAAAAGCAGTTGAGAGTACTCCATCCGCTTCTGGAATTGAGGATCTATTTAAAGATTCACCTACGCCTTTGGTAACACCAAGCTTAATTCCAGAAAAACCACAGAAAGATTTAAAAAACGATATAATGAGCCTCTTTGAGAAGTCCAGTATGGTGTCTCCATTTGCAATGCATCAACAACAACTTGCCATGCTGGCACAACAACAGTCCCTACTAATGGCTGCTGCAGCTAAATCTGTGGGTGGGGACCCTAAGAATCTTGGTAGTTTACAGCAATCTGGACTGAATGGGTCCAATATTGCTGCACGAAGCTGGCCAGGTGTCGGCTACCCTATCCCTGGAGCCGTGCCAATGCCTGGTCAGGCAGAGCTATTGAAACTCATGCAGACTGGGAACATGACTCCAGCACAGCCTGCAGGAAGTGCTGTTCAATATCCATCTGGTTTCTATATGATGGGAGAAGTTGCTCCAGTTAATGGTATGCCCACAACCGGAGGGAGTAAGCCTCAGCCGGCAGCTCCAGCATCATCAACCTCTTCACAGTCTTCAGGAAAGGACTGTGATTTTTCCTCTTTAACACAAGGGATGTTTTCAAAACACTGA 1452 0.458 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVAKDGKPTSPSRLQGQGDKASSHWQRPAEKSGHVSHASAAENTFEERKKVQPSNTTPATKFSVSAPPKGPQLAIPVIKPQHVEKVEAVAPQPQAETTKPANDMPESTPAKVDYATDLFDMLSMDGPSENDSNAAAATADDNNWAGFQSAATGASTAEKTSPTKAVESTPSASGIEDLFKDSPTPLVTPSLIPEKPQKDLKNDIMSLFEKSSMVSPFAMHQQQLAMLAQQQSLLMAAAAKSVGGDPKNLGSLQQSGLNGSNIAARSWPGVGYPIPGAVPMPGQAELLKLMQTGNMTPAQPAGSAVQYPSGFYMMGEVAPVNGMPTTGGSKPQPAAPASSTSSQSSGKDCDFSSLTQGMFSKH 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02994 483 CDD ArfGap 19 117 - -
Accr1g02994 483 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Accr1g02994 483 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Accr1g02994 483 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Accr1g02994 483 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Accr1g02994 483 MobiDBLite consensus disorder prediction 273 291 - -
Accr1g02994 483 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Accr1g02994 483 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 483 IPR044520 GO:0005096
Accr1g02994 483 MobiDBLite consensus disorder prediction 273 316 - -
Accr1g02994 483 MobiDBLite consensus disorder prediction 446 483 - -
Accr1g02994 483 MobiDBLite consensus disorder prediction 124 194 - -
Accr1g02994 483 MobiDBLite consensus disorder prediction 443 483 - -
Accr1g02994 483 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Accr1g02994 483 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Accr1g02994 483 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Accr1g02994 483 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02994 Accr-Chr1 66706399 66711347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02994 16 144 C2H2 Transcription Factor Family AT4G05330 45.985 2.99e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02994 K12486 - gmx:100807561 644.425