Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02978 ATGGGAGTGCCAGAGATAGACCCGCTAGCTCAATTGAGCCTACCTCCTGGTTTTCGGTTTTATCCGACCGATGAGGAGCTTCTGGTTCAGTATCTAAGCCGGCAGGTGGCCGGCCACCATTTCTCTCTGCAAATCATTGGCGAAATTGACTTGTACAAATTCGACCCATGGGTTCTTCCAGACAAAGCCATTTTCGGTGAGAAAGAATGGTACTTCTTCAGCCCGAGAGACCGAAAGTATCCAAACGGTTCCCGACCCAACAGGGTCGCGGGGTCTGGGTACTGGAAAGCCACTGGAACCGACAAAATCATCAGCACCGCTGGTCGAAAGGTTGGCATAAAGAAAGCTCTCGTTTTCTATATTGGGAAAGCACCGAAAGGCACCAAAACCAATTGGATCATGCACGAGTACCGCCTCCTCGATTCTTCCCGAAAGAGCGGAAGCACCAAGCTCGATGATTGGGTTCTGTGTCGGATATATAAGAAGAACTCGAGCTCTCAGAAGACTACGCCGATGATGGTTCCAACCGAATACAGCCACGGGTCGTCTTCGTCATCGTCGTCCCACTTGGACGATATGCTGGAATCGTTGCCAGAAATCGACGACCGGTGTTTCGCGCTGCCACGTGTGAGCTCGCTGAAGACGTGGCAGCAGGAGGAGAAGCTGAATCTTCAGAATCTGAATGGTGGCAATAATTTCATGGAGTGGGCCAATCCGGCGATTATGAACTCGGTGACGGAGTTCATTTCCGGGAATCAAACGCAGAACCAATCTCAATCCCAAGGGATGGTGAATTACAGTTCAATCAGCGACGTGCAACATGTGCCGTCGATCCCGCCGCTGACGGTGCCGGAGGAGGAGGTCCAGAGCGGAGTGAGTAGTTCGGGGTTTTATCAGCAGACTTCAAATGCGTTCACGCAGGGGTTCGGTAACCCAATGAATGACCCGTATGGATTCAGATACCCGAATGAGACGATGGGGTTCGGATTTAGACAATGA 999 0.5145 MGVPEIDPLAQLSLPPGFRFYPTDEELLVQYLSRQVAGHHFSLQIIGEIDLYKFDPWVLPDKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTAGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKSGSTKLDDWVLCRIYKKNSSSQKTTPMMVPTEYSHGSSSSSSSHLDDMLESLPEIDDRCFALPRVSSLKTWQQEEKLNLQNLNGGNNFMEWANPAIMNSVTEFISGNQTQNQSQSQGMVNYSSISDVQHVPSIPPLTVPEEEVQSGVSSSGFYQQTSNAFTQGFGNPMNDPYGFRYPNETMGFGFRQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02978 332 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Accr1g02978 332 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Accr1g02978 332 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Accr1g02978 332 MobiDBLite consensus disorder prediction 167 190 - -
Accr1g02978 332 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 250 - -
Accr1g02978 332 FunFam NAC domain-containing protein 72-like 23 167 - -
Accr1g02978 332 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02978 Accr-Chr1 66526099 66527311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02978 1 332 NAC Transcription Factor Family AT4G27410 57.224 1.37e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02978 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02978 - - pvy:116146142 449.129