Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02958 ATGAGTCCCCGATGGACGCGTCGCCGACGTAGCTCCGTCCGGCCGTCGGTTTTTCCGGCCAATGCTGAACCTAGCCGCTTCCTCAAGATCATACTTCCGGGAGACATTCATGCCCAGAACATGGTGATTCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTGTAGTAGTGAGGCAACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAATCTGAAAACGAAGTTATGTTCTGCAAGACCTGGGAGGAATTTGTGAAATACTACTCTCTTAGATTTGGCTTCTTTTTAGTGTTTACATATGAAGGCAATTCACAGTTCAGTGTGGTGATCTTTGATCCGAGTGCTGCTGAGATTTACTATCCACTCAAAGTTAACCCTGAGAAGCAGAACTCGGCACCTAAACGGCGTAGAAAAACGCCATCCAGCTTTGATCAATGTGGCTACAACACAAGGAGCCAAAGGCAGAAGCTGGTGGAAGATGAACAAGAAATAATTGACATAGAAGATGAAGATGCATTAAGCCATGGCAAATCAGGGAACAGGGATAGATCTGGGCAAGGCCATTGTTCCAAAATGACGAATAGAGCTTTAAGTAAAAGAAGGCAAAGAGCTGAGCAAGCTACCCAGAATGAATCAAAAAATCCTCTATCTTTTACTGCAATAATAAGGCGAAACAATCTAAATCGTCATTATTTTGATGTGCCTTCTTCATTCTGGAAGGTTTATCTGTACAAAAATTATCCTATGAAGCTGCAGGATTGTGGTGGACGAAAATGGAATGTCAATTATGTCAAACGCAAGTCATATCTCCGAATACTGAAGGGTTGGATCAGTTTTGCAAGGGCCAACAATTTGAAGGGCGGAGACGTCTGTGATTTTGAGCTTATCAAGAGGAACAACTACTTTGTATTTCAAGTTACCCGAAAGGCATAA 951 0.429 MSPRWTRRRRSSVRPSVFPANAEPSRFLKIILPGDIHAQNMVIPKEFVRRFENELCSSEATIGVPDGRVWKMELKKSENEVMFCKTWEEFVKYYSLRFGFFLVFTYEGNSQFSVVIFDPSAAEIYYPLKVNPEKQNSAPKRRRKTPSSFDQCGYNTRSQRQKLVEDEQEIIDIEDEDALSHGKSGNRDRSGQGHCSKMTNRALSKRRQRAEQATQNESKNPLSFTAIIRRNNLNRHYFDVPSSFWKVYLYKNYPMKLQDCGGRKWNVNYVKRKSYLRILKGWISFARANNLKGGDVCDFELIKRNNYFVFQVTRKA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02958 316 MobiDBLite consensus disorder prediction 134 153 - -
Accr1g02958 316 CDD B3_DNA 26 118 IPR003340 GO:0003677
Accr1g02958 316 ProSiteProfiles B3 DNA-binding domain profile. 223 316 IPR003340 GO:0003677
Accr1g02958 316 ProSiteProfiles B3 DNA-binding domain profile. 26 120 IPR003340 GO:0003677
Accr1g02958 316 Pfam B3 DNA binding domain 225 315 IPR003340 GO:0003677
Accr1g02958 316 Pfam B3 DNA binding domain 27 118 IPR003340 GO:0003677
Accr1g02958 316 Gene3D - 19 122 IPR015300 -
Accr1g02958 316 CDD B3_DNA 223 314 IPR003340 GO:0003677
Accr1g02958 316 Gene3D - 202 315 IPR015300 -
Accr1g02958 316 MobiDBLite consensus disorder prediction 175 190 - -
Accr1g02958 316 SMART B3_2 224 316 IPR003340 GO:0003677
Accr1g02958 316 SMART B3_2 27 120 IPR003340 GO:0003677
Accr1g02958 316 Coils Coil 200 220 - -
Accr1g02958 316 SUPERFAMILY DNA-binding pseudobarrel domain 220 310 IPR015300 -
Accr1g02958 316 SUPERFAMILY DNA-binding pseudobarrel domain 23 120 IPR015300 -
Accr1g02958 316 PANTHER B3 DOMAIN-CONTAINING 23 310 - -
Accr1g02958 316 MobiDBLite consensus disorder prediction 175 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02958 Accr-Chr1 66360671 66362303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02958 27 313 B3 DNA Binding Superfamily AT3G18990 27.164 9.35e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr1g02958 B3 1.1e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02958 - - pcin:129315065 366.311