Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02927 ATGGATAGCTACTTCCATGTCGATAATGGTGATGCCCATCTGCCTCCAGGGTTTCGCTTCCACCCAACTGACGAGGAACTCATTACTTTCTACCTCCTCAAGAAGGTTCTAGACAACACCTTCACCGGGAGAGCGATTGCTGAAGTTGATCTTAACAAGTGTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTTAGCCTACGAGACCGAAAGTACCCAACTGGACTGCGAACTAACAGGGCAACAGAGGCTGGATACTGGAAGGCCACTGGAAAAGACAGGGAGATTTACAGCTCCAAAACTTGCAGTCTGGTGGGCATGAAGAAGACTCTGGTTTTCTACAGAGGAAGAGCTCCAAAAGGCGAGAAGAGCAACTGGGTCATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTATCATTATCTCTCACGCAGCTCCAGGGATGAATGGGTCATCTCGCGTGTTTTCCAGAAGAGTCTCTCCTCCACGGGGAACGGCAGCTCCACTGTCTCTTCCGCCAGTGGCTCCAAAAAGACCCACACAAGAATGAGCTCTTCCGTTACCATGAGCCTCTACCCAGAACCCAGTTCTCCTTCCATCTACCTTCCTCCTCTGCTTGATTCGTCTCCTTACTCCGCCGCCGCTAATGACCGTGACAGTTGCTCCTACGATGGCAGCAGCACAACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTTTCTGCTTCTGCTGCCGCCAACAACCTCCCGAATGTTAGCTATGAACTTGCTCCACCTCCGCCGCCGCCAGTTGTTCTGGACCCATTTGCTCGATTCCAGAACAACGTAGGTGTTCCCGCGTTCCCGAGCCTGAGATCACTGCAGGAGAATCTTCAACTGCCTTTTCTAGCTCAGGCGGCGGCCATGGCTCATGGTGGCTGCAATGGTGGTGACATGAACGGATGGGTGAAGCCGGAGGAGCAGACTGTGGCGGGTGGTGGTACCGGCATGGCGCTGTTCCCGTCGGAACTTGATTACATGTGGGGCGGCTACTAG 1059 0.5297 MDSYFHVDNGDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSRDEWVISRVFQKSLSSTGNGSSTVSSASGSKKTHTRMSSSVTMSLYPEPSSPSIYLPPLLDSSPYSAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLPNVSYELAPPPPPPVVLDPFARFQNNVGVPAFPSLRSLQENLQLPFLAQAAAMAHGGCNGGDMNGWVKPEEQTVAGGGTGMALFPSELDYMWGGY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02927 352 FunFam NAC domain-containing protein 100-like 23 170 - -
Accr1g02927 352 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Accr1g02927 352 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Accr1g02927 352 MobiDBLite consensus disorder prediction 168 199 - -
Accr1g02927 352 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
Accr1g02927 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 219 - -
Accr1g02927 352 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02927 Accr-Chr1 66129602 66131368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02927 4 349 NAC Transcription Factor Family AT5G53950 53.476 5.09e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr1g02927 NAM 1.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02927 - - qsa:O6P43_029134 454.521