Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02911 ATGGATCAACGAAGGCAAGAGTATTATCATTCTGAACCCTGTGTCATTCTGAGAGGCCCCAACATCTCTCAGCCAAATATCCACACAATGGTGGCAGCTCCAGGAAACACCAGTAACATTGATTCCCACTATTCGCCAGATGCTTATGACAATGGTTTGATGTATGGAATGACACAGTTTAACGGGGTTCATCATCAACCCAATCTTGATGTGGGTGTTGCGGCATCACCTAGCTTGGCTTTTCCTGCAATTAATCATGCCTCTGGTGCTGGTGTAGTGCCTCAGCCCATTAATTACCGAGCACCTGATCAACTGCCAGCTCCAGGCACATATCCTGTCTCTGGAATTTTCATGGATGATGCAAGATGTCCATACAAACAAAAAATTGCTGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTGCAGCTAGTTCTTTGGTAGCTCCTCCAAATGCTAGGCACTCTGTTGGGGTTACTGCATCTCTTTCTTTGCCTCAATTTAGAGGAAATCACATTCCACCACTTGTAGAAGTTGGACCTCACGGTAGTTTGTGGAGCAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTGGGCCAGCATTTTCAACCTGCTCCACCTCCATGGTTGGACCAGCAGTTGAACGGTATCAACACTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATCCCTAATGTGCAAGCTGCTGTTAATGGAAATTCATTGGAGAGTGCAAATGCAGGTATGCAAAGATATCATGAAACAGCTAGCAACAGAAGCAGCCTCAGGTTTGCTCATCCTCCTCCTGTTAACCACCAACACCATAATTATCACCTTCCCAATCTGCCTATGCAAGGAGTAAGAGGCCACAATATCACCTTTCCCCCTCCAGTTACCGTAACTGCTTATAGAGGAGTTCCATCAAATTCTTCCCACAGTACCATTGTACCGGCACAGAATGGTTTTGGGTTGGGTGCTAGGCATGTTGGCCCTGCACCATCAGCAAGCCAATGGGTTCATCGTTCTCATAGAGTAGTCATGCCTGATACATCTCTTAGACATCACAATTCCCGTCCAATGAGGTTTTTCCATGTTGATGATGTTGCTTTACTCGATGAAGTGGAAAATTTAGGTGACCATCATCATGGTGATATGCATTTGGACATCGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGTATTGGCAATGTGAACACAGGTTTGTCAGAGGAAACTATCACAACTCAATTGAAAACAAAAACTTTCGAGTCCTCCGCTCCCGCAAATCTGGAGGAGGCAGCGTCTGGGGATGATGAGGAACCTGATTCTTGCATCATATGCCTGGAGGAATATAAGAACCAAGAGACGATTGGAATTCTCAAATGTGGGCATGATTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCTATATGCAAATCAGAGGCATCGACCTCTAGAAGGAAGGACGTATAA 1533 0.4494 MDQRRQEYYHSEPCVILRGPNISQPNIHTMVAAPGNTSNIDSHYSPDAYDNGLMYGMTQFNGVHHQPNLDVGVAASPSLAFPAINHASGAGVVPQPINYRAPDQLPAPGTYPVSGIFMDDARCPYKQKIAEGIRGNYQHFNAAASSLVAPPNARHSVGVTASLSLPQFRGNHIPPLVEVGPHGSLWSRSGDSVMVHEHNHLIRGNYLGQHFQPAPPPWLDQQLNGINTEGHNMAWNQSHSIPNVQAAVNGNSLESANAGMQRYHETASNRSSLRFAHPPPVNHQHHNYHLPNLPMQGVRGHNITFPPPVTVTAYRGVPSNSSHSTIVPAQNGFGLGARHVGPAPSASQWVHRSHRVVMPDTSLRHHNSRPMRFFHVDDVALLDEVENLGDHHHGDMHLDIEDMSYEELLALGERIGNVNTGLSEETITTQLKTKTFESSAPANLEEAASGDDEEPDSCIICLEEYKNQETIGILKCGHDYHADCLKKWLLLKNVCPICKSEASTSRRKDV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02911 510 SUPERFAMILY RING/U-box 452 503 - -
Accr1g02911 510 CDD RING-H2_RNF24-like 456 502 - -
Accr1g02911 510 SMART ring_2 458 498 IPR001841 -
Accr1g02911 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 504 IPR013083 -
Accr1g02911 510 ProSiteProfiles Zinc finger RING-type profile. 458 499 IPR001841 -
Accr1g02911 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 124 503 IPR045191 GO:0061630
Accr1g02911 510 Pfam Ring finger domain 456 499 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02911 Accr-Chr1 66022511 66025011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02911 366 502 C3H Transcription Factor Family AT2G15530 46.809 1.42e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02911 K19041 - qsa:O6P43_029149 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g02911 1 66022511 66025011 Accr1g02911 1 66022511 66025011 ECH