Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02910 ATGACTGATTTGGAAATGGATCAACGAAGGCAAGAGTATTATCATTCTGAACCCTGTGTCATTCTGAGAGGCCCCAACATCTCTCAGCCAAATATCCACACAATGGTGGCAGCTCCAGGAAACACCAGTAACATTGATTCCCACTATTCGCCAGATGCTTATGACAATGGTTTGATGTATGGAATGACACAGTTTAACGGGGTTCATCATCAACCCAATCTTGATGTGGGTGTTGCGGCATCACCTAGCTTGGCTTTTCCTGCAATTAATCATGCCTCTGGTGCTGGTGTAGTGCCTCAGCCCATTAATTACCGAGCACCTGATCAACTGCCAGCTCCAGGCACATATCCTGTCTCTGGAATTTTCATGGATGATGCAAGATGTCCATACAAACAAAAAATTGCTGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTGCAGCTAGTTCTTTGGTAGCTCCTCCAAATGCTAGGCACTCTGTTGGGGTTACTGCATCTCTTTCTTTGCCTCAATTTAGAGGAAATCACATTCCACCACTTGTAGAAGTTGGACCTCACGGTAGTTTGTGGAGCAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTGATTCGAGGAAACTATTTGGGCCAGCATTTTCAACCTGCTCCACCTCCATGGTTGGACCAGCAGTTGAACGGTATCAACACTGAAGGACATAATATGGCCTGGAATCAGTCTCATTCAATCCCTAATGTGCAAGCTGCTGTTAATGGAAATTCATTGGAGAGTGCAAATGCAGGTATGCAAAGATATCATGAAACAGCTAGCAACAGAAGCAGCCTCAGGTTTGCTCATCCTCCTCCTGTTAACCACCAACACCATAATTATCACCTTCCCAATCTGCCTATGCAAGGAGTAAGAGGCCACAATATCACCTTTCCCCCTCCAGTTACCGTAACTGCTTATAGAGGAGTTCCATCAAATTCTTCCCACAGTACCATTGTACCGGCACAGAATGGTTTTGGGTTGGGTGCTAGGCATGTTGGCCCTGCACCATCAGCAAGCCAATGGGTTCATCGTTCTCATAGAGTAGTCATGCCTGATACATCTCTTAGACATCACAATTCCCGTCCAATGAGGTTTTTCCATGTTGATGATGTTGCTTTACTCGATGAAGTGGAAAATTTAGGTGACCATCATCATGGTGATATGCATTTGGACATCGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGTATTGGCAATGTGAACACAGGTTTGTCAGAGGAAACTATCACAACTCAATTGAAAACAAAAACTTTCGAGTCCTCCGCTCCCGCAAATCTGGAGGAGGCAGCGTCTGGGGATGATGAGGAACCTGATTCTTGCATCATATGCCTGGAGGAATATAAGAACCAAGAGACGATTGGAATTCTCAAATGTGGGCATGATTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCTATATGCAAATCAGAGGCATCGACCTCTAGAAGGAAGGACGTATAA 1548 0.4483 MTDLEMDQRRQEYYHSEPCVILRGPNISQPNIHTMVAAPGNTSNIDSHYSPDAYDNGLMYGMTQFNGVHHQPNLDVGVAASPSLAFPAINHASGAGVVPQPINYRAPDQLPAPGTYPVSGIFMDDARCPYKQKIAEGIRGNYQHFNAAASSLVAPPNARHSVGVTASLSLPQFRGNHIPPLVEVGPHGSLWSRSGDSVMVHEHNHLIRGNYLGQHFQPAPPPWLDQQLNGINTEGHNMAWNQSHSIPNVQAAVNGNSLESANAGMQRYHETASNRSSLRFAHPPPVNHQHHNYHLPNLPMQGVRGHNITFPPPVTVTAYRGVPSNSSHSTIVPAQNGFGLGARHVGPAPSASQWVHRSHRVVMPDTSLRHHNSRPMRFFHVDDVALLDEVENLGDHHHGDMHLDIEDMSYEELLALGERIGNVNTGLSEETITTQLKTKTFESSAPANLEEAASGDDEEPDSCIICLEEYKNQETIGILKCGHDYHADCLKKWLLLKNVCPICKSEASTSRRKDV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02910 515 ProSiteProfiles Zinc finger RING-type profile. 463 504 IPR001841 -
Accr1g02910 515 Pfam Ring finger domain 461 504 IPR001841 -
Accr1g02910 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 508 IPR045191 GO:0061630
Accr1g02910 515 CDD RING-H2_RNF24-like 461 507 - -
Accr1g02910 515 SMART ring_2 463 503 IPR001841 -
Accr1g02910 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 509 IPR013083 -
Accr1g02910 515 SUPERFAMILY RING/U-box 457 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02910 Accr-Chr1 66022511 66025026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02910 371 507 C3H Transcription Factor Family AT2G15530 46.809 1.85e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02910 K19041 - qsa:O6P43_029149 565.074