Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02892 ATGAGTTGTTTCTCTTGTTTTATCAGGAAAAAGGGATGTGTCTCAGCCGCACAACCAAACGAAATTGATCTTGACATTCAGAATGTGAACCTTTACACCTACAAGGAACTTGAAACTGCCACAGAAGGATTTAGCCCAGCAAACAAGATAGGGCAAGGCGGTTTCGGATCTGTCTATAAGGGAAAGCTCAGAAATGGGACTCTTGCTGCTATAAAGGTGTTGTCAGCTGACTCGCATCAAGGGGTTCGGGAATTCCTGACAGAAATCAAGGTGATCACTAGCATAGAGCACGAGAACCTAGTTAAGTTGTACGGATGCTGTGTGGAAGGAGATCACAGGATTCTGGTGTATGGCTATCTTGAAAATAATAGCCTAGCTCAGACACTTATTGGTGGAGGCCATAGTAGCATTCAGTTCAGTTGGCCAGTGCGGAGGAACATTTGCATCGGTGTTGCACGGGGCCTAACATTCCTTCATGAGGAGGTGGACCCACATATTATTCATAGAGACATTAAAGCAAGCAATATACTACTTGATAAAAACCTGCAGCCTAAAATTTCTGATTTTGGACTTGCAAAGCTTCTTTCTCCAAACCTAACCCATATTAGTACACGTGTTGCTGGAACAGCTGGTTATCTAGCGCCTGAGTATGCAATACGAAGTCAAGTAACAAGAAGATCAGATATCTACAGTTTCGGAGTTCTATTATTGGAAATCGTTAGTGGGAGGTGTAATACAAACCGACGGTTACCTGCTGAAGAACATTATCTTGTTCCAAAGGCATGGACTATGTATGAAAATGGGGAGCTGGAGAAACTGGTGGATGCATTGCTAGAAGACGACTTCAATATCGAGGAGGCATGCCGGTTTTGCAAGATTGGTCTTCTCTGCACCCAGGATTCTCCTCAGCTTCGACCATCAATGTCTTCTGTGCTTGGCATGTTGAAGAGTGAAATTGACGTTGATGAAAAGAAAATTACAAAGCCAGGATTACTGTTTGAGTTTGTAGAAATCAAAGATGCAAAGAAGCAAAAAGATGAGGCTGAAGTGCAAAGTACATCTTCCCTTGGCACCTCCAAGAAGCAAGATGATTCCTCTTTGACAGAAACCGCAACTTCTTTTGCTGCCATGACCTTCACTTCGATTTATGACCGAAGCTCTTAA 1164 0.4304 MSCFSCFIRKKGCVSAAQPNEIDLDIQNVNLYTYKELETATEGFSPANKIGQGGFGSVYKGKLRNGTLAAIKVLSADSHQGVREFLTEIKVITSIEHENLVKLYGCCVEGDHRILVYGYLENNSLAQTLIGGGHSSIQFSWPVRRNICIGVARGLTFLHEEVDPHIIHRDIKASNILLDKNLQPKISDFGLAKLLSPNLTHISTRVAGTAGYLAPEYAIRSQVTRRSDIYSFGVLLLEIVSGRCNTNRRLPAEEHYLVPKAWTMYENGELEKLVDALLEDDFNIEEACRFCKIGLLCTQDSPQLRPSMSSVLGMLKSEIDVDEKKITKPGLLFEFVEIKDAKKQKDEAEVQSTSSLGTSKKQDDSSLTETATSFAAMTFTSIYDRSS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02892 387 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Accr1g02892 387 FunFam cold-responsive protein kinase 1 15 119 - -
Accr1g02892 387 ProSiteProfiles Protein kinase domain profile. 44 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02892 387 SMART serkin_6 44 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02892 387 CDD STKc_IRAK 50 316 - -
Accr1g02892 387 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Accr1g02892 387 MobiDBLite consensus disorder prediction 346 368 - -
Accr1g02892 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Accr1g02892 387 SUPERFAMILY Protein kinase-like (PK-like) 25 315 IPR011009 -
Accr1g02892 387 Gene3D Phosphorylase Kinase; domain 1 14 119 - -
Accr1g02892 387 Pfam Protein kinase domain 47 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr1g02892 387 MobiDBLite consensus disorder prediction 350 368 - -
Accr1g02892 387 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 327 - -
Accr1g02892 387 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 27 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02892 Accr-Chr1 65916306 65918546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02892 24 366 Receptor kinase-like Gene Family AT1G53430 49.714 2.40e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr1g02892 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02892 - - gmx:100797257 591.267