Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02890 ATGTTACAAAACAAAGAAATAGATGATTTATATGATGACAACTTTGAAGGTTCCAATGATGAAAGACGGATTTTTACTGAGGTATTTTTTGGCACAGACAGTGTTCAGCCTAGTCAGAGGTGTCTTGTTACTGGAGCCATCAACTTTGAATGTGAATCTAGTAAAAACCCAAATATTTCACTCTGCTCTAGCAATGAAAACTCAGTTGTAACAAGCCCCTCTTCTTCAAAAGTGACTCATTCTGAGGAAGATTGCGATGTGATTCAGAATTTGAAAGAGGCTGCTCTTGATTGTATGCCTGAGAGGTTCAATTATGAAGGCCCAAATCACGAGGATGTAAATGCCAAACGCATGAAATTTTCCCTGCATGAACTTCACTGTAGTAGATCCAATTTCAAAAAGGTTTTGCGTTCACCAACACTTTCAAAAGGATGTGTTACTGGCATGTCTGGTGCTGTTATAGACTTTGATAGTAAACCTCTTTCACTTCGTTTAGTTGAATCATCAAAGCATGGTTTGATATCCAGTTGCTATCTGTTGAGGCATAGCATGATGCCAAACAAACGAAGAGGTAAGGATGATGTAGATGTTTCAAATTGTACAAAAACCACTGCAGATGGAAATTTGGCCAAAGAAGTGGCTACAGGTAAAGTGGCTGCTTCTCCTGTTTCCCAAGAGAGCTTCGCAAATAAGATTGTAGTAACAAGTCCATCAATCACTGCTGTGGAGAAATCTGGATCTCATTTCCAATTTGAAGAGACGGCTAAAGGATTTTTATCCTTTGATGCAGACAAGTCAAATTTATCAGTGACACCAGACCTCAAGAAAGATCCCCGTGATTTATTGCATTACCGTAGTGTGAGGTTGCTTTTGATGGCAGGATGGTCTATTGAAAAGATCAAGAGACCTTGTAGAAACTACTTTGAGTCACTCTATAGGACACCAGAAGGAAGGCCAGTTCGTGAGTTTATAAAAGCTTGGAGGTTATGTGGTCAGTTTTTGTCTGTTGACAAGTACAATTCAATGCAGGATAATTGTAAAGAATGGGCTGATATTGGTCAATTCTTGTCTGATCTATCCAATGCACTGATAAATGTTGAAAAGGAAATGAATCAATCAGAGCCAGCTTCTATGTTAGCTTATCAGTGGTGGCTCCTGGATCCTTTTGTAGTACTAATTTTTGTTAAAAGAAAGATTGGTGCACTCAAAAGGGGGGAACTAGTGAAGGTGACTCGAAGTATAGTTCCAAGAAATTATAGGATGGCATGTAATGCCAAAAGTTCAGCCTGGGAGGATACTCCTGCAGCTCCATTTGATCTGAAACATGGCTCAGCTTTTCTTTTTGACTCTGCTACTGCCACTGGGAGCAAACTAACAACGTCTCTGCTCAACTACCATGCCTGTAATCAGAAAACTGGGGATGGAAATAACTTAGGATATGAACAGACAATTGGTGGGGTGATAAAACTTCCAATATATGAATGTAATAGTATCGGTAACCAAGAAGAAATGCTCTTACAACACAATGCTGACTGTGAAGGAAATCAATGCAGGAAAGCGTCTTTGTATGAAAGAAGCATTCTTGGTGTAGGCTTGTTACATGATGGTGGGTTGGGTTTTACCGGTACACAGTCAAGTGCTTGTACTTCCAATGTTACTACTTCTGGAAATTCAAATCAGGTACTTAGAGGGCTTAAGGTAAACACTAGTCTGGAAAGTAATGTTAGAAATTTTAAAAGCTCTGATGAAAAGTACTTGGAAAATTTGTTGGAAACAAGTAAGGGAGTTGGTGGGGATGTGCCAATGGACAAGGTAGAGGAAAAGGATCCATCAGATGGTGAAGTTCAAGATCTTTATGGAAGTTATCTGCAGGAATCCTTGAATAGATATCCACAAGGAGCAAGATGTGGCTTGGTCCATTGTCATGCCTCAGAGGCTGTTCAGCAGTCTGGATATGGTGAGGAACGGGGTGGAAAAAGATCAAGAGCTTCAGTGCTTGGGACAGAAAACACATGTTCTACCCCTGATGCTAATCTGACAAAGAAGGTACGGAGGAAGTGTAAAAGGGTATCTGAAATCAAACTGAGTATGTTATATGAAAGTAACGCGATGGGTTCTACAATTACAGATGAGGTCCAATTACCAAATGGTGAGGCATGTGGTACTCGCTTAGAATTTGAAGAGGGTGAGCATGTAGTTGGCAATGCAGAGGATAGAGGAGCCCACAGTAAATTATCATCAACCAGTTCATTCCAGCAACCACATATTGGAAGAACAAATGCAAAGTTTAGAAAGAGTTGTAACAACTATGACCCTATAACTGAAAAACCAAAGTCTAGTGGATGCCAGATTGCAGATGATGACCTGTTGGTTTCAGCTATTTTTAAGAAAACAGGTTTAATGCGAGGGGAATCTAAATCTAAATCCTGCAAATCAAGAGCTCAGAGAAAGCTGAAAAGGAAAAAGGATCGTTGCAGGTTGCTACCAAGGAACCTTGGCAATGGAGGGAAGCGCATTAGAGATGGCATGAGGTGTTATCTTGGGGCAAGAACAGTGCTGTCATGGTTGGTTGAGCATGGGATCATATCTATAAATGACGTGATTCAATACCGAAACCTTAAAGATAATGCTGTCATTAAGGATGGCAGGATTACCAGTGATGGCATTATATGTAAGTGTTGCAATAAGTTGCTTACATTATCTGAGTTCAAGTTTCATGCTGGGTATAGATTGAATCGCCCCTGCTTGAACCTTTTCATGGAGTCTGGTGAGCCCTTTACATTGTGCCTGCTTCAAGCTTGGTCTGCTGAATACAAGGCTAGGAAAAGTGGGAATCAAACTGTGAAAGCTGATGACGATGGTGATAAAAACGATGACTCTTGTGGATTGTGTGGTGATGGCGGTGAGTTGATATGCTGTGATAACTGTCCATCAGCTTTCCATCTTGCTTGTTTGTCCACTCAGGATATCCCCGAAGGCAACTGGTACTGCACAAGCTGCACTTGTCATATTTGTGAGAATTTTGTCAATGATAAAGAGGCTTCTGGTGCTCGTGATGCATTTCGATGTTTACAGTGTGAGCATAAATATCATGAAAAATGTCTGAGTGGAGGTGGTAAACCAGAAGGGGAAGTTTCTGACAGTTGGTTCTGTGGTGGACGCTGCCAAGAGGTATACTCTGGTCTTCAATCTCGGGTTGGACTTGTTAATCACATTGATGGTGGCCTCTCATGGATGCTTCTTAAATGCATCCAAGATGACCAAAAGGTTCATTCTGCCCAGTGGTTTGCCCTCAAGGCAATATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGCTTTTTGTCAATGGTGGATCCTAGAACAGGCATAGACATGATACCCCATGCTTTATATAATTGGGGGTCTGATTTTGCTCGCCTGAATTTTCAAGGATTTCATACCGTGGTATTGGAGAAAAAGGATGTCATAATTTCTGTTGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCACTTATTGCTACTTGCAGCAGGTACCGCCGGCAGGGAATGTGCCGACTCCTTGTGAGTGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGCAAAGCTTGTGATAGCAGCCATTCCTGATTTGGTGGAGACTTGGACCAAGGGCTTTGGATTCAAACCTGCAGGTGATGATGAAAAGCAGAAACTGAACAAGATAAACCTGATGGTTTTTCCTGGGACTGTATTACTTGAGAAACTCTTGTTCAAGGAAGATAAAACAGAAGATGACTTGACCAAAGAAGGTGTCTACTGTAAAGGAATGGCGATGGCTGAACCATTGCAACAAGACGTCAGAGACAACTCCGTTGATGAAATTGGTGCCAATACCGATGCTGAACATGGTTGCAGCGAGAGTGACGCAGATTACAGAACTGAATCACTGCGGCAAGATGTAAAAAACAATTATACTGATCAACTCAGTACTAAGTCTGAAACAGAACATGTTTGCAGCAAGAGTTTCCCAGATTACAGAGCTGAGTCATCGTTAGGATTGAAAGAAACAGCGGATAGGAATACCCATTTAAGTGGAGAGAAGATCAATGGCTTTGTAGACAGTACGCAGGAATTGAGAATTAACAGCAAAATGGAATCTACAAACGAGTCTGTGCAGCACTCTAGTGGGAACTGTTGTACCAACAAAGATTGGAGTGAATCAGAAGTAGTAAGAATTTTTGAGAACGGGGATATCAAAGTGGGTGAAGGTCAGGAAAATGGCTTGCGGGGCCCTTTTTTGCAAATGTCCTGCAAAGCAGTATTAGGCAACAATTTTGACGTGGATTCCATAATTGAATCCTCGGGAATGTATGATGAAACACAGCTTTCTTTGGAACAGAACTCAGCAGGAGGCATGTGA 4422 0.4138 MLQNKEIDDLYDDNFEGSNDERRIFTEVFFGTDSVQPSQRCLVTGAINFECESSKNPNISLCSSNENSVVTSPSSSKVTHSEEDCDVIQNLKEAALDCMPERFNYEGPNHEDVNAKRMKFSLHELHCSRSNFKKVLRSPTLSKGCVTGMSGAVIDFDSKPLSLRLVESSKHGLISSCYLLRHSMMPNKRRGKDDVDVSNCTKTTADGNLAKEVATGKVAASPVSQESFANKIVVTSPSITAVEKSGSHFQFEETAKGFLSFDADKSNLSVTPDLKKDPRDLLHYRSVRLLLMAGWSIEKIKRPCRNYFESLYRTPEGRPVREFIKAWRLCGQFLSVDKYNSMQDNCKEWADIGQFLSDLSNALINVEKEMNQSEPASMLAYQWWLLDPFVVLIFVKRKIGALKRGELVKVTRSIVPRNYRMACNAKSSAWEDTPAAPFDLKHGSAFLFDSATATGSKLTTSLLNYHACNQKTGDGNNLGYEQTIGGVIKLPIYECNSIGNQEEMLLQHNADCEGNQCRKASLYERSILGVGLLHDGGLGFTGTQSSACTSNVTTSGNSNQVLRGLKVNTSLESNVRNFKSSDEKYLENLLETSKGVGGDVPMDKVEEKDPSDGEVQDLYGSYLQESLNRYPQGARCGLVHCHASEAVQQSGYGEERGGKRSRASVLGTENTCSTPDANLTKKVRRKCKRVSEIKLSMLYESNAMGSTITDEVQLPNGEACGTRLEFEEGEHVVGNAEDRGAHSKLSSTSSFQQPHIGRTNAKFRKSCNNYDPITEKPKSSGCQIADDDLLVSAIFKKTGLMRGESKSKSCKSRAQRKLKRKKDRCRLLPRNLGNGGKRIRDGMRCYLGARTVLSWLVEHGIISINDVIQYRNLKDNAVIKDGRITSDGIICKCCNKLLTLSEFKFHAGYRLNRPCLNLFMESGEPFTLCLLQAWSAEYKARKSGNQTVKADDDGDKNDDSCGLCGDGGELICCDNCPSAFHLACLSTQDIPEGNWYCTSCTCHICENFVNDKEASGARDAFRCLQCEHKYHEKCLSGGGKPEGEVSDSWFCGGRCQEVYSGLQSRVGLVNHIDGGLSWMLLKCIQDDQKVHSAQWFALKAICNTKLAVALTIMEECFLSMVDPRTGIDMIPHALYNWGSDFARLNFQGFHTVVLEKKDVIISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVSAIEEMLISVKVAKLVIAAIPDLVETWTKGFGFKPAGDDEKQKLNKINLMVFPGTVLLEKLLFKEDKTEDDLTKEGVYCKGMAMAEPLQQDVRDNSVDEIGANTDAEHGCSESDADYRTESLRQDVKNNYTDQLSTKSETEHVCSKSFPDYRAESSLGLKETADRNTHLSGEKINGFVDSTQELRINSKMESTNESVQHSSGNCCTNKDWSESEVVRIFENGDIKVGEGQENGLRGPFLQMSCKAVLGNNFDVDSIIESSGMYDETQLSLEQNSAGGM 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02890 1473 SMART PHD_3 960 1001 IPR001965 -
Accr1g02890 1473 SMART PHD_3 1002 1056 IPR001965 -
Accr1g02890 1473 CDD PHD1_AIRE 961 1000 - -
Accr1g02890 1473 Pfam Tify domain binding domain 882 932 IPR032308 -
Accr1g02890 1473 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1109 1233 IPR016181 -
Accr1g02890 1473 Gene3D - 1130 1245 - -
Accr1g02890 1473 SUPERFAMILY FYVE/PHD zinc finger 949 1001 IPR011011 -
Accr1g02890 1473 PANTHER PHD FINGER FAMILY PROTEIN 2 1399 - -
Accr1g02890 1473 Pfam PHD-finger 961 1002 IPR019787 -
Accr1g02890 1473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1019 IPR013083 -
Accr1g02890 1473 ProSiteProfiles Zinc finger PHD-type profile. 958 1003 IPR019787 -
Accr1g02890 1473 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1108 1250 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02890 Accr-Chr1 65883782 65891751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02890 1 416 PHD Transcription Factor Family AT3G14980 34.129 6.05e-47 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr1g02890 TDBD 3.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02890 - - pcin:129315189 2419.42