Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02880 ATGTCTCTCATTAGAGTTTTTCGTTCTCGTAAGTTCTCCAGATCGTTTAGGGGAACTGGTGCTCTGGATGAGGACGACCGGAGGAACGGGATCGGTGGAGGCGATGGGGCTGAGGCCGGTGAGGACCCGGCGTACGGCAATGGGTGGTCCACCATGCTGCCGGAGCTTCTCGGAGAGATCATACGGCGGATGGAGGTCAGCGAGGAGCGGTGGCCCAACCGCCAGAACGTTGTCGCTTGTGCGGGTGTCTGTAAGAGGTGGAGGGAGATGACGCGTGAGATCGTACGGTCCCCTTCTCAGAGCAGCAAAATTACTTTCCCTTCTTGCCTTAAAGAGCCAGGACCACGTGATTCACCTTACCAGTGTCTTATTAAGCGAAACAAGAGGACTTCAACATTTTACCTATATCTTGCCCTTACGCCATCATTCACAGATAAAGGGAAGTTTCTCTTGGCAGCTAGGAGATATCGGCGTGGTGCTAATACCGAATATATCATATCACTTGATGCTGAAGACTTTTCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACTATCTATGACAGCAAGCCACCCCATAATGGTGCGAAGCCATCAAGCTGCAGGGCAAGCCGAAGATTTACGAGCAAGCAGATATGCCCACAGGTTCCTGCAGGAGAAAGCTCAGATAACAAAAATCTTGATGCCGCGGATAAGACAAACGATAAAGAACATGTTGTCGCTTCTGGCTACTCAATGTTGAAGAACAAAGCCCCAAGATGGCATGAACATTTGCAGTGTTGGTGCCTGAATTTCCATGGTCGTGTGACCGTTGCGTCAGTGAAAAATTTTCAGCTGGTTGCCACAGTGGATCAGAGCCAACCAGGCGGAAAAGGAGATGAGGAAACAGTTCTCCTGCAGTTTGGGAAGGTTGCGGATGATACCTTCACCATGGATTATAGGCAGCCCTTATCAGCCTTCCAGGCTTTTGCTATTTGCCTAACAAGCTTTGGCACTAAACTGGCGTGTGAGTGA 1041 0.4966 MSLIRVFRSRKFSRSFRGTGALDEDDRRNGIGGGDGAEAGEDPAYGNGWSTMLPELLGEIIRRMEVSEERWPNRQNVVACAGVCKRWREMTREIVRSPSQSSKITFPSCLKEPGPRDSPYQCLIKRNKRTSTFYLYLALTPSFTDKGKFLLAARRYRRGANTEYIISLDAEDFSQGSNAYVGKLSSDFLGTNFTIYDSKPPHNGAKPSSCRASRRFTSKQICPQVPAGESSDNKNLDAADKTNDKEHVVASGYSMLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02880 346 PRINTS Tubby superfamily signature 274 290 IPR000007 -
Accr1g02880 346 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Accr1g02880 346 PRINTS Tubby superfamily signature 256 273 IPR000007 -
Accr1g02880 346 PRINTS Tubby superfamily signature 303 322 IPR000007 -
Accr1g02880 346 PRINTS Tubby superfamily signature 324 346 IPR000007 -
Accr1g02880 346 SUPERFAMILY Tubby C-terminal domain-like 98 346 IPR025659 -
Accr1g02880 346 ProSitePatterns Tub family signature 1. 274 287 IPR018066 -
Accr1g02880 346 PANTHER TUBBY-RELATED 33 344 - -
Accr1g02880 346 MobiDBLite consensus disorder prediction 19 45 - -
Accr1g02880 346 CDD F-box_AtTLP-like 49 93 - -
Accr1g02880 346 Gene3D Tubby Protein; Chain A 108 340 IPR025659 -
Accr1g02880 346 Pfam Tub family 110 224 IPR000007 -
Accr1g02880 346 Pfam Tub family 239 341 IPR000007 -
Accr1g02880 346 Pfam F-box domain 54 96 IPR001810 GO:0005515
Accr1g02880 346 ProSitePatterns Tub family signature 2. 331 346 IPR018066 -
Accr1g02880 346 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02880 Accr-Chr1 65770129 65773470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02880 1 346 TUB Transcription Factor Family AT1G53320 64.675 1.03e-170 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Accr1g02880 Tub 1.4e-37 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02880 K19600 - qsa:O6P43_029189 538.88